Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- golgi 5
- endoplasmic reticulum 5
- extracellular 7
- plasma membrane 5
- vacuole 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra027040.1-P | Field mustard | extracellular | 76.77 | 74.51 |
| CDY70376 | Canola | extracellular | 70.03 | 72.73 |
| CDY12951 | Canola | extracellular | 65.99 | 71.01 |
| GSMUA_Achr4P26830_001 | Banana | plastid | 25.59 | 57.58 |
| KRH57376 | Soybean | plasma membrane | 33.0 | 54.75 |
| KRH04104 | Soybean | extracellular, plasma membrane | 32.66 | 54.49 |
| PGSC0003DMT400093516 | Potato | plastid | 40.07 | 51.97 |
| VIT_02s0154g00310.t01 | Wine grape | extracellular, plasma membrane | 41.41 | 50.62 |
| Solyc08g078890.1.1 | Tomato | extracellular, golgi, plasma membrane | 46.13 | 46.92 |
| AT2G10940.2 | Thale cress | endoplasmic reticulum, plasma membrane | 38.05 | 38.83 |
| AT4G15160.1 | Thale cress | extracellular | 35.69 | 38.55 |
| GSMUA_Achr4P29020_001 | Banana | plastid | 26.94 | 38.28 |
| AT3G22120.2 | Thale cress | plastid | 38.05 | 32.19 |
| AT3G22142.1 | Thale cress | extracellular, plasma membrane, vacuole | 30.3 | 6.08 |
Protein Annotations
| Gene3D:1.10.110.10 | MapMan:35.1 | EntrezGene:842547 | ProteinID:AAD43607.1 | ProteinID:AEE33972.1 | ArrayExpress:AT1G62500 |
| EnsemblPlantsGene:AT1G62500 | RefSeq:AT1G62500 | TAIR:AT1G62500 | RefSeq:AT1G62500-TAIR-G | EnsemblPlants:AT1G62500.1 | TAIR:AT1G62500.1 |
| EMBL:AY045962 | EMBL:AY079346 | EMBL:AY087579 | Unigene:At.16344 | InterPro:Bifun_inhib/LTP/seed_sf | InterPro:Hydrophob_seed |
| RefSeq:NP_176439.1 | PFAM:PF14547 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0001054 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 |
| PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009052 |
| PO:PO:0020038 | PO:PO:0020100 | PO:PO:0025022 | PFscan:PS51257 | PANTHER:PTHR31731 | PANTHER:PTHR31731:SF25 |
| UniProt:Q9SXE7 | SUPFAM:SSF47699 | SignalP:SignalP-noTM | TMHMM:TMhelix | UniParc:UPI00000A1560 | SEG:seg |
Description
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9SXE7]
Coordinates
chr1:+:23131928..23133507
Molecular Weight (calculated)
29682.2 Da
IEP (calculated)
9.952
GRAVY (calculated)
0.158
Length
297 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSRVLASFF VFLIFTVITL PPTIQACTPC TRPHPPVPKP PQHGGGGGGG SKPPPHHGGK GGGKPPPHGG KGGGPPHHGG GGGGGGKSPP VVRPPPVVVR
101: PPPIIRPPPV VYPPPIVRPP PITRPPIIIP PIQPPPVTTP PGLLPPITTP PGLLPPVTTP PGLLPPVTTP PGLLPPIINP PPVTVPPPSS GYPPYGPPSG
201: GGGGGGGKQP TCPINALKLG ACVDVLGGLI HIGLGNPVEN VCCPVLQGLL ELEAAVCLCT TIRLKLLNLN IFIPLALQAL ITCGINPPSG FVCPPLT
101: PPPIIRPPPV VYPPPIVRPP PITRPPIIIP PIQPPPVTTP PGLLPPITTP PGLLPPVTTP PGLLPPVTTP PGLLPPIINP PPVTVPPPSS GYPPYGPPSG
201: GGGGGGGKQP TCPINALKLG ACVDVLGGLI HIGLGNPVEN VCCPVLQGLL ELEAAVCLCT TIRLKLLNLN IFIPLALQAL ITCGINPPSG FVCPPLT
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.