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Thale cress
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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 3
  • cytosol 1
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, nucleus
BaCelLo:nucleus
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:nucleus
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
AT5G09540.1 Thale cress nucleus 15.31 43.57
CDY45966 Canola nucleus 37.01 39.65
CDY45473 Canola nucleus 36.89 39.3
Bra027007.1-P Field mustard nucleus 36.76 39.28
AT2G01710.2 Thale cress mitochondrion 13.68 30.7
GSMUA_Achr3P06790_001 Banana cytosol 12.17 29.85
AT5G64360.7 Thale cress nucleus 17.19 29.53
KRH42098 Soybean nucleus 16.19 28.35
Solyc07g007230.2.1 Tomato nucleus 14.93 27.93
Os09t0463700-01 Rice nucleus 12.55 26.88
VIT_03s0017g00300.t01 Wine grape nucleus 16.31 26.75
KRH49811 Soybean nucleus 15.68 26.54
PGSC0003DMT400079004 Potato cytosol 16.81 26.22
KRH10601 Soybean nucleus 15.56 24.95
KRH21766 Soybean nucleus 15.18 24.25
KXG35797 Sorghum nucleus 11.67 24.22
Zm00001d047214_P001 Maize extracellular 12.05 24.18
Zm00001d020762_P001 Maize nucleus 13.3 24.09
GSMUA_Achr10P... Banana cytosol 12.42 23.52
EER92178 Sorghum nucleus 11.79 23.33
Zm00001d029409_P001 Maize nucleus, peroxisome, plastid 11.54 23.23
Os07t0620200-01 Rice cytosol, mitochondrion, nucleus 11.42 22.98
EES14021 Sorghum nucleus 12.67 22.85
TraesCS4A01G160900.1 Wheat cytosol 11.42 22.75
TraesCS4D01G156000.1 Wheat nucleus 11.42 22.69
TraesCS4B01G160100.1 Wheat cytosol 11.42 22.69
HORVU5Hr1G055620.1 Barley cytosol, nucleus, plastid 8.41 22.64
HORVU4Hr1G039650.1 Barley nucleus 11.29 22.61
Zm00001d047043_P001 Maize nucleus 12.17 22.4
GSMUA_Achr1P21390_001 Banana cytosol 11.17 22.08
Os03t0392400-01 Rice nucleus 10.66 20.99
HORVU2Hr1G030250.2 Barley cytosol 10.16 20.82
Zm00001d022168_P001 Maize cytosol, mitochondrion, peroxisome 11.42 20.59
TraesCS5A01G245400.1 Wheat cytosol, nucleus, plastid 13.55 20.45
HORVU5Hr1G069570.1 Barley nucleus 13.93 20.33
TraesCS5B01G242900.1 Wheat cytosol 13.43 20.3
TraesCS5D01G252200.1 Wheat cytosol, nucleus, plastid 13.3 20.11
PGSC0003DMT400083794 Potato nucleus 18.7 20.05
KXG36712 Sorghum cytosol 10.92 20.0
TraesCS2B01G191300.1 Wheat cytosol 9.79 19.9
TraesCS2A01G165100.1 Wheat cytosol 9.66 19.69
Solyc01g105780.2.1 Tomato nucleus 17.31 19.25
TraesCS2D01G172200.1 Wheat cytosol 9.41 19.18
Solyc11g006140.1.1 Tomato nucleus 13.93 18.66
Solyc11g006170.1.1 Tomato nucleus 14.55 17.87
PGSC0003DMT400073845 Potato cytosol 14.55 17.79
Protein Annotations
Gene3D:1.10.287.110MapMan:12.5.1.16.2EntrezGene:842599ProteinID:AEE34028.1EMBL:AK228669ProteinID:ANM59591.1
ArrayExpress:AT1G62970EnsemblPlantsGene:AT1G62970RefSeq:AT1G62970TAIR:AT1G62970RefSeq:AT1G62970-TAIR-GEnsemblPlants:AT1G62970.1
TAIR:AT1G62970.1Unigene:At.70139InterPro:DnaJ_domainGO:GO:0005575GO:GO:0005622GO:GO:0005623
GO:GO:0005737GO:GO:0005829InterPro:IPR001623InterPro:IPR036869InterPro:J_dom_sfRefSeq:NP_001321936.1
RefSeq:NP_176485.2PFAM:PF00226PO:PO:0000013PO:PO:0000037PO:PO:0000230PO:PO:0000293
PO:PO:0001054PO:PO:0001078PO:PO:0001081PO:PO:0001185PO:PO:0004507PO:PO:0007098
PO:PO:0007115PO:PO:0007611PO:PO:0007616PO:PO:0008019PO:PO:0009005PO:PO:0009006
PO:PO:0009009PO:PO:0009010PO:PO:0009025PO:PO:0009030PO:PO:0009031PO:PO:0009032
PO:PO:0009046PO:PO:0009047PO:PO:0009052PO:PO:0020038PO:PO:0020100PO:PO:0020137
PO:PO:0025022PFscan:PS50076PANTHER:PTHR45496UniProt:Q0WQM3SUPFAM:SSF46565UniParc:UPI00001970FA
SEG:seg:::::
Description
Chaperone DnaJ-domain superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q0WQM3]
Coordinates
chr1:+:23323272..23326188
Molecular Weight (calculated)
87712.7 Da
IEP (calculated)
8.503
GRAVY (calculated)
-0.818
Length
797 amino acids
Sequence
(BLAST)
001: MMSHGGGGGV SNGGGGDAER MLAQAEKLLL SGDLNGSKTY AIRACEADHS LVDHAELILA VADTLVAGES RIRGTTSDLP DWYAVLRLVR LTHNPELVAT
101: QYSRLAVLLN PSRNRYPYSE QAFRLISDAW YVLSDPSRKT LYDRELHLSQ FGQLGQLGFQ LFNQTPQSQS QSPQHHQQQS QSPQHPNQNQ TVSFQNQQLP
201: FQLHQPHFAQ AVQTQSQSQQ QRSQFDQQLL QEQQQASWRQ QVGQEHSSGS SGDWKRPVEE VRLINLNNAT ERVQSSRRFA EPERPPSRSF EGSSHRTPST
301: ELTWASKPTP VSEPVRHSEL VPWQYSEPAR QYQLSSRSSE AAQLSLLPSV SDSSHASQPT RSNQSHAVSK PQPVSKPHPP FPMSQPPPTS NPFPLSQPPS
401: NSKPFPMSQS SQNSKPFPVS QSSQKSKPLL VSQSSQRSKP LPVSQSLQNS NPFPVSQPSS NSKPFPVSQP QPASNPFPVS QPRPNSQPFS MSQPSSTARP
501: FPASQPPAAS KSFPISQPPT TSKPFVSQPP NTSKPMPVSQ PPTTSKPLPV SQPPPTFQST CPSQPPAASS SLSPLPPVFN STQSFQSPPV STTPSAVPEA
601: STIPSPPAPA PVAQPTHVFN QTPPPEQTPK SGAARTDSEP EVSSFWTTCP YCYVLYEYPI IYEESVLKCQ TKSCRRAYQA VKVPSPPPVA EEDSYYCCWG
701: FYPIGFSEVV TKIPVTGLHT KIPVSDLPKS APKKPSPKVY YYDDEEEDDD SYIGSDPSED DDDDDWLMNG TKRRKNVKQS KAKATTKPKR QKVIEVD
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.