Skip to main content
crop-pal logo
Thale cress
Search for another protein from :
Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol, mitochondrion

Predictor Summary:
  • plastid 2
  • mitochondrion 4
  • cytosol 2
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, mitochondrion
Any Predictor:cytosol, mitochondrion, plastid
BaCelLo:plastid
iPSORT:mitochondrion
MultiLoc:cytosol
Predotar:mitochondrion
PProwler:mitochondrion
TargetP:mitochondrion
WoLF PSORT:plastid
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX94576 Canola plastid 79.54 79.15
Bra029518.1-P Field mustard plastid 72.96 78.82
CDY16646 Canola plastid 78.32 78.51
AT4G21880.1 Thale cress cytosol 54.57 53.14
KRG88500 Soybean cytosol 5.48 48.39
VIT_19s0014g05230.t01 Wine grape cytosol 34.59 48.38
KRH55647 Soybean cytosol 26.92 47.63
PGSC0003DMT400049471 Potato cytosol 24.85 47.33
KRH25868 Soybean cytosol, nucleus, plastid 15.71 46.4
KRH25865 Soybean cytosol 8.28 46.26
GSMUA_Achr1P26200_001 Banana extracellular 19.24 44.51
KRH22239 Soybean cytosol 23.02 40.21
Solyc07g064110.2.1 Tomato plastid 40.68 39.29
Os02t0132600-02 Rice cytosol 25.46 38.7
KRH27097 Soybean cytosol, mitochondrion 33.98 36.95
TraesCS6A01G096500.1 Wheat cytosol, mitochondrion 34.59 32.95
TraesCS6D01G087600.1 Wheat cytosol, plastid 34.23 32.6
TraesCS6B01G124900.1 Wheat cytosol, plastid 34.47 32.49
HORVU6Hr1G017720.35 Barley plastid 34.35 31.76
Zm00001d015156_P001 Maize plastid 33.86 29.02
OQU84311 Sorghum mitochondrion 34.47 28.91
KRG88502 Soybean vacuole 12.91 28.12
GSMUA_Achr1P26220_001 Banana plastid 14.49 27.93
KRH55650 Soybean mitochondrion, plastid 13.15 27.91
Protein Annotations
Gene3D:1.25.40.10MapMan:35.1EntrezGene:825816ProteinID:AAD03456.1ProteinID:AEE82426.1EMBL:AK221389
ProteinID:ANM67698.1ArrayExpress:AT4G04790EnsemblPlantsGene:AT4G04790RefSeq:AT4G04790TAIR:AT4G04790RefSeq:AT4G04790-TAIR-G
EnsemblPlants:AT4G04790.1TAIR:AT4G04790.1Unigene:At.4041EMBL:BT010578ProteinID:CAB80844.1GO:GO:0003674
GO:GO:0003676GO:GO:0003723GO:GO:0003824GO:GO:0004518GO:GO:0004519GO:GO:0005488
GO:GO:0005515GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0005739
GO:GO:0006139GO:GO:0008150GO:GO:0008152GO:GO:0009451GO:GO:0009987GO:GO:0016787
GO:GO:0043231GO:GO:0090305InterPro:IPR002885InterPro:IPR011990RefSeq:NP_001329514.1RefSeq:NP_192388.3
PFAM:PF01535PFAM:PF17177PO:PO:0000013PO:PO:0000037PO:PO:0000230PO:PO:0000293
PO:PO:0001054PO:PO:0001078PO:PO:0001081PO:PO:0001185PO:PO:0004507PO:PO:0007064
PO:PO:0007095PO:PO:0007098PO:PO:0007103PO:PO:0007115PO:PO:0007123PO:PO:0007611
PO:PO:0007616PO:PO:0008019PO:PO:0009005PO:PO:0009006PO:PO:0009009PO:PO:0009010
PO:PO:0009025PO:PO:0009029PO:PO:0009030PO:PO:0009031PO:PO:0009032PO:PO:0009046
PO:PO:0009047PO:PO:0009052PO:PO:0020030PO:PO:0020038PO:PO:0020100PO:PO:0020137
PO:PO:0025022InterPro:PPR_longPFscan:PS51375PANTHER:PTHR24015PANTHER:PTHR24015:SF623InterPro:Pentatricopeptide_repeat
UniProt:Q6NQ81TIGRFAMs:TIGR00756InterPro:TPR-like_helical_dom_sfUniParc:UPI00005DC237SEG:seg:
Description
Pentatricopeptide repeat-containing protein At4g04790, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q6NQ81]
Coordinates
chr4:-:2434869..2439403
Molecular Weight (calculated)
92840.9 Da
IEP (calculated)
6.478
GRAVY (calculated)
-0.242
Length
821 amino acids
Sequence
(BLAST)
001: MVVSKVNKSL LSSVFKSRIR PTGESSIASG NKDIAGTSQA VKDLLSSKNS SSDLEEASLQ DRVSKLLHVT TSDKSSLEKN LFLKIPSFTT KIPYDISLRT
101: KELSRERKER RVYKQNGLSR RFAKIFRDSA QKLGTEAMFG AFDRVAKEMS VTEYNAMIGV YLEHAEKSND LDYALGHIEK AFELLKSMRD RGFLIEERVY
201: GPLLGYLIGM DMVDEFHSFK DVIREASPGS VERLGYYEML LWIHLGDGEK IEELCSTIDG DNGESLSVLQ ENYLLALCKK DQKYHLERLL EIVDITKVRS
301: SDLLANIFEY LGRFSLDSVA SRFLWELRES DEGVKNVSDL ISIYSTCTPN PTVEDTILKF NKMHEELDVM PSSTSYEKLV KYSCDSNEVV TALDVVEKMG
401: EAGLMISADI LHSLLHAIDE VLEFDLVRRI HSIMCTKSVK PNTENFRSII RLCTRIKDFE GAYNMLGNLK NFNLEPNSSM FNCILAGYFR EKNVSSALMV
501: VKQMKEAGVK PDSITFGYLI NNCTQEDAIT KYYEEMKQAG VQATKRIYMS LIDAYAASGK FEKAKQVLVD PDVPAINQNE LKSVLISALA SRGKWADALH
601: IYEEMRKAEC HVDPKSIISL IEYSDSKGEL STLVQLADDL QDDTSWIDGF FRMILFAVRN KKSSDIVDLL KRNKVRLLKK GIPVEAHFDE VFWAIAETEP
701: SKVHLGMDLL RFMKDELGFV PSRKCLDFLL HACVNAKDLE HGLLVWKEYQ SAAFPCNVLS FLRMYQVLLA AGDSEGAKAL VSKIPKDDKD VQHIIEESQS
801: AFSQAPNKKK PKKKMIVLST K
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.