Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 3
- cytosol 2
- plasma membrane 1
- extracellular 1
- endoplasmic reticulum 1
- golgi 1
- vacuole 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX79101 | Canola | cytosol, mitochondrion | 71.17 | 72.55 |
| Bra013567.1-P | Field mustard | cytosol, mitochondrion | 65.24 | 70.6 |
| CDX82873 | Canola | cytosol, mitochondrion | 70.46 | 69.31 |
| AT4G04790.1 | Thale cress | cytosol, mitochondrion | 53.14 | 54.57 |
| KRG88500 | Soybean | cytosol | 5.46 | 49.46 |
| KRH25865 | Soybean | cytosol | 8.42 | 48.3 |
| VIT_19s0014g05230.t01 | Wine grape | cytosol | 33.57 | 48.21 |
| PGSC0003DMT400049471 | Potato | cytosol | 24.56 | 48.03 |
| KRH55647 | Soybean | cytosol | 25.62 | 46.55 |
| GSMUA_Achr1P26200_001 | Banana | extracellular | 19.34 | 45.92 |
| KRH25868 | Soybean | cytosol, nucleus, plastid | 14.47 | 43.88 |
| KRH22239 | Soybean | cytosol | 22.78 | 40.85 |
| Solyc07g064110.2.1 | Tomato | plastid | 40.69 | 40.35 |
| Os02t0132600-02 | Rice | cytosol | 24.67 | 38.52 |
| KRH27097 | Soybean | cytosol, mitochondrion | 33.21 | 37.09 |
| TraesCS6D01G087600.1 | Wheat | cytosol, plastid | 33.57 | 32.83 |
| TraesCS6A01G096500.1 | Wheat | cytosol, mitochondrion | 33.45 | 32.71 |
| TraesCS6B01G124900.1 | Wheat | cytosol, plastid | 33.57 | 32.49 |
| HORVU6Hr1G017720.35 | Barley | plastid | 33.1 | 31.42 |
| Zm00001d015156_P001 | Maize | plastid | 31.67 | 27.87 |
| OQU84311 | Sorghum | mitochondrion | 32.15 | 27.68 |
| GSMUA_Achr1P26220_001 | Banana | plastid | 13.88 | 27.46 |
| KRH55650 | Soybean | mitochondrion, plastid | 12.34 | 26.87 |
| KRG88502 | Soybean | vacuole | 11.98 | 26.79 |
Protein Annotations
| Gene3D:1.25.40.10 | MapMan:35.1 | EntrezGene:828277 | UniProt:A0A178UWX3 | ProteinID:AEE84518.1 | ProteinID:ANM67481.1 |
| ArrayExpress:AT4G21880 | EnsemblPlantsGene:AT4G21880 | RefSeq:AT4G21880 | TAIR:AT4G21880 | RefSeq:AT4G21880-TAIR-G | EnsemblPlants:AT4G21880.1 |
| TAIR:AT4G21880.1 | Unigene:At.32591 | ProteinID:CAA17155.1 | ProteinID:CAB79143.1 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0003824 | GO:GO:0004518 | GO:GO:0004519 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005739 | GO:GO:0006139 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009451 | GO:GO:0009987 | GO:GO:0016787 | GO:GO:0043231 |
| GO:GO:0090305 | InterPro:IPR002885 | InterPro:IPR011990 | RefSeq:NP_001329309.1 | RefSeq:NP_193919.6 | UniProt:O49711 |
| ProteinID:OAO97887.1 | PFAM:PF01535 | PFAM:PF13041 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000293 |
| PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007115 | PO:PO:0007611 |
| PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 |
| PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 |
| PO:PO:0009052 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0025022 | PFscan:PS51375 | PANTHER:PTHR24015 |
| PANTHER:PTHR24015:SF623 | InterPro:Pentatricopeptide_repeat | TIGRFAMs:TIGR00756 | InterPro:TPR-like_helical_dom_sf | UniParc:UPI00018E18B9 | SEG:seg |
Description
Pentatricopeptide repeat-containing protein At4g21880, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:O49711]
Coordinates
chr4:+:11604986..11610651
Molecular Weight (calculated)
94766.6 Da
IEP (calculated)
6.303
GRAVY (calculated)
-0.205
Length
843 amino acids
Sequence
(BLAST)
(BLAST)
001: MALKAKKSLS AIFRFAMRNA AKTAEVEAKA VAGDSLISDT GPVSMSLIPD FLSSLKSPED SSNIGQDFGE PALAGQVSSA LDVKSIGYNL LRERNGEKVF
101: PKNVLETLDL LSRKGCSSQK PKQASRGRML TENYQNKQSE IMEKLAKGCV RKLGTETMFE VLTKMGKEAG EKEYNAMTKL CIQRARRSND AEYALDQIGK
201: AIEHLKEMRQ LGFSIGEGAY GPFFKYLVDM EMVAEFQILK DFIKEACPES CGRLVYYEML LWIQVNDEEK IHKLCNKVDD SGLSLSILQE YYLVALCEKD
301: SKENFQKLLE IVDITTVSSP DALKSIFGYL GKSLLESVAM KLLWELRDCR KDGVETVSNL IFSYATCIPN STVEDAIFKF NKLHEELDIV PSSTSYENLV
401: SYLCGSNEVV TALDIVENMC EAGLVISANI LHSLLQAIEQ ILEFNLVQRI YSIMSNKSVK PNSETFRKSI NLCIRIKDFE GAYNMLGNLK NFNLAPNSSM
501: YNSIMAGYFR EKKVNSALKV LKEMKEADVK PDSVTFSYLI NYCGEEATIA KYYKEMKQAG VEVNKHVYMS LVKAYASCGQ FEKAKQVLMD LEVPAKDHNE
601: LKSVLISALA SNGNITEALS IYEEMKKLRC PVEPKAILSL IENSDSNAEL GTLVELTHEL RDSKFWIDGF FKIIVFAVRN NRSSSILDLL EQTKNHLSKD
701: DVGVEYWFEE VFKSIAETES SDVKVGLDLV SFMKEELELC PSRKCLDFLL HACVNAKDKQ SALLVWEEYQ CAELPYNVIN YLRMYQVLVA AGDSKSAEAI
801: VSKIPNDDKD VKCIIKESRI VFTPKLKKKK KKSKQKGLSL QAK
101: PKNVLETLDL LSRKGCSSQK PKQASRGRML TENYQNKQSE IMEKLAKGCV RKLGTETMFE VLTKMGKEAG EKEYNAMTKL CIQRARRSND AEYALDQIGK
201: AIEHLKEMRQ LGFSIGEGAY GPFFKYLVDM EMVAEFQILK DFIKEACPES CGRLVYYEML LWIQVNDEEK IHKLCNKVDD SGLSLSILQE YYLVALCEKD
301: SKENFQKLLE IVDITTVSSP DALKSIFGYL GKSLLESVAM KLLWELRDCR KDGVETVSNL IFSYATCIPN STVEDAIFKF NKLHEELDIV PSSTSYENLV
401: SYLCGSNEVV TALDIVENMC EAGLVISANI LHSLLQAIEQ ILEFNLVQRI YSIMSNKSVK PNSETFRKSI NLCIRIKDFE GAYNMLGNLK NFNLAPNSSM
501: YNSIMAGYFR EKKVNSALKV LKEMKEADVK PDSVTFSYLI NYCGEEATIA KYYKEMKQAG VEVNKHVYMS LVKAYASCGQ FEKAKQVLMD LEVPAKDHNE
601: LKSVLISALA SNGNITEALS IYEEMKKLRC PVEPKAILSL IENSDSNAEL GTLVELTHEL RDSKFWIDGF FKIIVFAVRN NRSSSILDLL EQTKNHLSKD
701: DVGVEYWFEE VFKSIAETES SDVKVGLDLV SFMKEELELC PSRKCLDFLL HACVNAKDKQ SALLVWEEYQ CAELPYNVIN YLRMYQVLVA AGDSKSAEAI
801: VSKIPNDDKD VKCIIKESRI VFTPKLKKKK KKSKQKGLSL QAK
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.