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Thale cress
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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 3
  • mitochondrion 2
  • cytosol 1
  • plastid 2
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:nucleus
iPSORT:mitochondrion
MultiLoc:cytosol
Plant-mPloc:plastid
PProwler:mitochondrion
TargetP:plastid
WoLF PSORT:nucleus
YLoc:nucleus
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX92677 Canola nucleus, plastid 82.3 86.21
CDY11056 Canola nucleus, plastid 81.69 85.65
Bra019188.1-P Field mustard nucleus 82.21 82.72
GSMUA_Achr4P26310_001 Banana cytosol 5.32 68.54
Solyc03g093850.1.1 Tomato cytosol 35.4 66.67
VIT_16s0013g00300.t01 Wine grape nucleus 52.57 55.78
GSMUA_Achr4P26320_001 Banana cytosol, mitochondrion, nucleus 43.16 54.28
Solyc03g093840.1.1 Tomato endoplasmic reticulum 10.99 53.16
Os07t0492100-01 Rice plastid 51.44 50.64
EER97255 Sorghum plastid 51.35 49.7
TraesCS2A01G226500.1 Wheat plastid 50.65 48.66
TraesCS2D01G237200.2 Wheat plastid 50.74 48.46
HORVU2Hr1G051300.27 Barley plastid 50.22 47.41
Zm00001d006443_P001 Maize nucleus 50.48 47.34
KRH33265 Soybean endoplasmic reticulum, plasma membrane, vacuole 6.97 36.36
TraesCS2B01G254500.1 Wheat plastid 4.71 14.63
Protein Annotations
Gene3D:1.10.10.160Gene3D:1.10.486.10Gene3D:3.40.50.300MapMan:35.1EntrezGene:828615ProteinID:AEE85014.2
ArrayExpress:AT4G25120EnsemblPlantsGene:AT4G25120RefSeq:AT4G25120TAIR:AT4G25120RefSeq:AT4G25120-TAIR-GEnsemblPlants:AT4G25120.1
TAIR:AT4G25120.1Unigene:At.32291ProteinID:CAB36754.1ProteinID:CAB79421.1UniProt:D1KF50InterPro:DExx_box_DNA_helicase_dom_sf
InterPro:DNA_helicase_UvrD-like_CInterPro:DNA_helicase_UvrD/REPGO:GO:0000166GO:GO:0003674GO:GO:0003676GO:GO:0003677
GO:GO:0003678GO:GO:0003824GO:GO:0004003GO:GO:0004386GO:GO:0005488GO:GO:0005524
GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005634GO:GO:0006139GO:GO:0006259
GO:GO:0006310GO:GO:0008150GO:GO:0008152GO:GO:0009987GO:GO:0016043GO:GO:0016787
GO:GO:0032508GO:GO:0036292GO:GO:0043138EMBL:GQ148553InterPro:IPR013986InterPro:IPR014016
InterPro:IPR014017RefSeq:NP_001320059.1InterPro:P-loop_NTPasePFAM:PF00580PFAM:PF13361PO:PO:0000013
PO:PO:0000037PO:PO:0000293PO:PO:0001054PO:PO:0001078PO:PO:0001081PO:PO:0004507
PO:PO:0007098PO:PO:0007611PO:PO:0007616PO:PO:0009005PO:PO:0009006PO:PO:0009009
PO:PO:0009010PO:PO:0009025PO:PO:0009031PO:PO:0009032PO:PO:0009046PO:PO:0009052
PO:PO:0020100PO:PO:0020137PO:PO:0025022PFscan:PS51198PFscan:PS51217PANTHER:PTHR11070
PANTHER:PTHR11070:SF2Symbol:SRS2SUPFAM:SSF52540UniParc:UPI0001BBEDD4InterPro:UvrD-like_ATP-bdInterPro:UvrD/AddA_N
SEG:seg:::::
Description
SRS2ATP-dependent DNA helicase SRS2-like protein At4g25120 [Source:UniProtKB/Swiss-Prot;Acc:D1KF50]
Coordinates
chr4:+:12890545..12898501
Molecular Weight (calculated)
129436.0 Da
IEP (calculated)
7.339
GRAVY (calculated)
-0.539
Length
1147 amino acids
Sequence
(BLAST)
0001: MENLPPNRGM WNQEYSHGRI SQSFRSAKPL LDRKRPIENA PNSSNPLPQR MKESMDTESV SHNINFNSTP LMELSANTPY KRLKPEIESY ADGHPCGLRT
0101: PPPRFDLDKE IINGFQTDIY ADVGSLSEAF VTPLKEPERV TLSNGCSTSS ILDDDFDDSI LEEIDLICEQ SARKAACQTP TTSIYQTPSK DNKSSDPKAS
0201: LDFRDVEKFE PDSNVKLKLD EETPTIAADP ALLNSMPDEC SKYMLSLNDR QRDAACSNIS TPLMVIAGPG SGKTSTMVGR VLVLLNEGLL PSNILAMTFT
0301: KAATSEMRER IGKSAGKKAA KDITISTFHS FSLQLCRMHA DKLQRTSEFS VYGHGQQRRA IIEAVRLYEE EKKNGSKTSV PCESGEGLNG AGAGAVCPEY
0401: AKDLSKKWQK FVTQGKASGK SPEQCRKMGN EIGAKILGNY NDILKACDAL DYHDLISCSV TLLSDFPEVF KECQDTWKAI IVDEFQDTST MQYKLLRMLG
0501: SHNHITIVGD DDQSIFGFNG ADSSGFDSFR RDFPNYKEVR LIKNYRSSRH IVEAASSIIK NNTKRCQSKS ISSENSQGSK ITVKECHNEE AQCAYVIDKI
0601: IEITNDGSTP CCSHGDIAIL YRRQVSGKVF QNAFRQRKIP FNVHGVAFYR KKVVQVILAM LKTTFSECDD ASYRRVFKAL LPFEKEEKKR IIEHIEKIST
0701: SRKCSFISAA SDIFNAKISG TFKRSQLTQG RKVLQTLDMV AKLVDREQSL SAVVTCVANM IPQKYLLEQR AVVDNDGGKL LNEDNDLRSV LQYLMDDVAE
0801: FISTHCTTTE EEDAIKEKKG CNQLHSFINY ISERETENFR SRRRDNENSV TLTTIHQSKG LEWDIVFIVK ANENEIPLLH ESNGNASESG TSLEEERRLL
0901: YVAMTRARKK LFFLYVTVDS NWQVLQPSRF LKEIPGHLLQ GDMSVNDCRK VHENLPNKTE QSVSSFGTDI KHEESKLTDN DVMNIPEDYA SEESIAAYAL
1001: NGNNFLKRFD VEVRSVVSHL FHNWAKKQAF QEPKRLIDKV RFVIGERLAI KKNKHKDVLR ALKSSLTSEE AFQYAEHVLR WEQLPADTRA HIVREKQEHF
1101: QKLRIENSMG TSEATSKQIA FLHSLGCTVV PTSRLHASRL IEQYKSL
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.