Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY12124 | Canola | nucleus | 56.57 | 59.93 |
| CDX90315 | Canola | nucleus | 55.61 | 58.61 |
| Bra010701.1-P | Field mustard | nucleus | 55.13 | 58.31 |
| Bra033600.1-P | Field mustard | endoplasmic reticulum | 27.24 | 54.49 |
| CDY56766 | Canola | nucleus | 43.91 | 51.12 |
| CDX72715 | Canola | nucleus | 41.51 | 49.9 |
| CDY16866 | Canola | vacuole | 42.47 | 48.71 |
| CDX87111 | Canola | nucleus | 39.26 | 45.37 |
| GSMUA_Achr2P23110_001 | Banana | nucleus | 7.21 | 31.47 |
| HORVU6Hr1G080290.6 | Barley | nucleus | 13.14 | 31.06 |
| TraesCS6D01G309500.4 | Wheat | nucleus | 12.98 | 30.45 |
| TraesCS6B01G361300.1 | Wheat | nucleus | 12.82 | 30.08 |
| PGSC0003DMT400045728 | Potato | nucleus | 24.2 | 21.15 |
| KRH34776 | Soybean | nucleus | 15.71 | 19.68 |
| Solyc02g081640.2.1 | Tomato | nucleus | 22.12 | 19.57 |
| TraesCS6A01G330400.1 | Wheat | nucleus, plastid | 14.9 | 18.49 |
| KRG92007 | Soybean | nucleus | 14.42 | 17.34 |
| Zm00001d017507_P001 | Maize | nucleus | 13.62 | 16.01 |
| KXG24287 | Sorghum | nucleus | 19.71 | 15.77 |
| HORVU1Hr1G067100.2 | Barley | nucleus | 19.07 | 15.12 |
| TraesCS1D01G314900.1 | Wheat | nucleus | 18.59 | 14.72 |
| TraesCS1A01G314400.2 | Wheat | nucleus | 18.43 | 14.59 |
| TraesCS1B01G326700.2 | Wheat | nucleus | 18.43 | 14.59 |
| Zm00001d035113_P001 | Maize | nucleus | 18.43 | 13.72 |
| OQU75762 | Sorghum | nucleus | 17.63 | 13.63 |
| KRH77688 | Soybean | nucleus | 20.19 | 13.48 |
| KRH27726 | Soybean | nucleus | 20.03 | 13.19 |
| VIT_03s0038g04460.t01 | Wine grape | nucleus | 21.79 | 12.92 |
| Zm00001d017505_P003 | Maize | plastid | 18.11 | 9.95 |
| Os03t0840500-00 | Rice | cytosol, nucleus | 5.93 | 8.67 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.4.3.2 | MapMan:15.5.2.2 | EntrezGene:830071 | ProteinID:AEE87030.1 | ArrayExpress:AT4G39160 |
| EnsemblPlantsGene:AT4G39160 | RefSeq:AT4G39160 | TAIR:AT4G39160 | RefSeq:AT4G39160-TAIR-G | EnsemblPlants:AT4G39160.2 | TAIR:AT4G39160.2 |
| ncoils:Coil | UniProt:F4JVA4 | GO:GO:0000126 | GO:GO:0001026 | GO:GO:0001156 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006359 | GO:GO:0006383 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0070898 | InterPro:Homeobox-like_sf |
| InterPro:IPR017884 | RefSeq:NP_001190961.1 | PFAM:PF15963 | PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000293 |
| PO:PO:0001017 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0004507 | PO:PO:0007131 | PO:PO:0007611 |
| PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009030 |
| PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0020100 | PO:PO:0025022 |
| PO:PO:0025195 | PO:PO:0025281 | PFscan:PS51293 | PANTHER:PTHR22929 | InterPro:SANT/Myb | InterPro:SANT_dom |
| SMART:SM00717 | SUPFAM:SSF46689 | InterPro:TFIIIB_B'' | UniParc:UPI0001E92F9C | SEG:seg | : |
Description
Homeodomain-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4JVA4]
Coordinates
chr4:+:18236355..18240478
Molecular Weight (calculated)
69959.9 Da
IEP (calculated)
4.458
GRAVY (calculated)
-1.107
Length
624 amino acids
Sequence
(BLAST)
(BLAST)
001: MDLDFDDQPS DHAAPAVRAG ARFKPKGRPQ PKKKQVSLST TQTTLSPDVA QEKLSTQSED LVPLDGSSEI PSNALPSETN VPDSGSINKS TIGTLSEENE
101: DAFPRGVHWS VKPSILRACN NVNLVGNRRD DGIEATTSFP DDPRTQDSAI FGDYVTPETG ADEGRVDMET LDIVQEEGTT SSYVQHTGKL QPKPRLLETV
201: VEEPEPHYSA GDTGYFPMGT NESEFMANVE SRNGFSTYED LQEEELNIPE APRETVGEME AQNASGGWEQ EEQGVSPCIN NTVTGEEENC MGNTVEEQSK
301: RESKTGKSKR ATSRKRKKTS EEPNKSSEKT EQKKFKHSSR RQKRTLEKEL LETPDHEIRS LPLRDMLRLV EYKEWMQKKE AKGAGVQPSQ ESNNMNGSGS
401: QYHSQGFDEE DEFGDFGIES SEYQENNVVK PDSPVNYQTY MNKTSRTRWS KEDTELFYEG IQEFGSNLSM IQQLFPERTR EQMKLKFKLE ERRNPLKLND
501: ALSSRSKHFT HFKNVIKKLQ QEAAAAKEGE EEEEAGAEAE TTDVPENEEP EKSEETERAS DGVAAGVKES DGGDVENGVR SDGGDECDDD EDFWNSYKSD
601: IICKRHAKLA MNTFVIFTNS KTRP
101: DAFPRGVHWS VKPSILRACN NVNLVGNRRD DGIEATTSFP DDPRTQDSAI FGDYVTPETG ADEGRVDMET LDIVQEEGTT SSYVQHTGKL QPKPRLLETV
201: VEEPEPHYSA GDTGYFPMGT NESEFMANVE SRNGFSTYED LQEEELNIPE APRETVGEME AQNASGGWEQ EEQGVSPCIN NTVTGEEENC MGNTVEEQSK
301: RESKTGKSKR ATSRKRKKTS EEPNKSSEKT EQKKFKHSSR RQKRTLEKEL LETPDHEIRS LPLRDMLRLV EYKEWMQKKE AKGAGVQPSQ ESNNMNGSGS
401: QYHSQGFDEE DEFGDFGIES SEYQENNVVK PDSPVNYQTY MNKTSRTRWS KEDTELFYEG IQEFGSNLSM IQQLFPERTR EQMKLKFKLE ERRNPLKLND
501: ALSSRSKHFT HFKNVIKKLQ QEAAAAKEGE EEEEAGAEAE TTDVPENEEP EKSEETERAS DGVAAGVKES DGGDVENGVR SDGGDECDDD EDFWNSYKSD
601: IICKRHAKLA MNTFVIFTNS KTRP
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.