Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY21586 | Canola | cytosol | 63.93 | 61.94 |
| Bra009389.1-P | Field mustard | cytosol | 62.86 | 60.07 |
| CDY69792 | Canola | cytosol | 62.5 | 59.73 |
| AT5G64360.7 | Thale cress | nucleus | 62.5 | 37.72 |
| GSMUA_Achr3P06790_001 | Banana | cytosol | 33.93 | 29.23 |
| AT2G01710.2 | Thale cress | mitochondrion | 35.36 | 27.89 |
| Solyc07g007230.2.1 | Tomato | nucleus | 40.36 | 26.53 |
| VIT_03s0017g00300.t01 | Wine grape | nucleus | 44.64 | 25.72 |
| KRH42098 | Soybean | nucleus | 41.43 | 25.49 |
| KRH49811 | Soybean | nucleus | 42.14 | 25.05 |
| GSMUA_Achr10P... | Banana | cytosol | 35.0 | 23.28 |
| Zm00001d047214_P001 | Maize | extracellular | 31.07 | 21.91 |
| TraesCS4A01G160900.1 | Wheat | cytosol | 31.07 | 21.75 |
| TraesCS4B01G160100.1 | Wheat | cytosol | 31.07 | 21.7 |
| TraesCS4D01G156000.1 | Wheat | nucleus | 31.07 | 21.7 |
| Os09t0463700-01 | Rice | nucleus | 28.57 | 21.51 |
| HORVU4Hr1G039650.1 | Barley | nucleus | 30.36 | 21.36 |
| EER92178 | Sorghum | nucleus | 30.71 | 21.34 |
| PGSC0003DMT400079004 | Potato | cytosol | 38.93 | 21.33 |
| HORVU5Hr1G055620.1 | Barley | cytosol, nucleus, plastid | 22.5 | 21.28 |
| GSMUA_Achr1P21390_001 | Banana | cytosol | 30.36 | 21.09 |
| KRH21766 | Soybean | nucleus | 37.5 | 21.04 |
| Zm00001d029409_P001 | Maize | nucleus, peroxisome, plastid | 29.64 | 20.96 |
| KRH10601 | Soybean | nucleus | 37.14 | 20.93 |
| KXG35797 | Sorghum | nucleus | 28.57 | 20.83 |
| Os03t0392400-01 | Rice | nucleus | 29.64 | 20.49 |
| Zm00001d047043_P001 | Maize | nucleus | 31.07 | 20.09 |
| Os07t0620200-01 | Rice | cytosol, mitochondrion, nucleus | 28.21 | 19.95 |
| EES14021 | Sorghum | nucleus | 30.71 | 19.46 |
| KXG36712 | Sorghum | cytosol | 28.93 | 18.62 |
| Zm00001d022168_P001 | Maize | cytosol, mitochondrion, peroxisome | 28.57 | 18.1 |
| Zm00001d020762_P001 | Maize | nucleus | 28.21 | 17.95 |
| HORVU2Hr1G030250.2 | Barley | cytosol | 24.29 | 17.48 |
| Solyc11g006140.1.1 | Tomato | nucleus | 37.14 | 17.48 |
| TraesCS2B01G191300.1 | Wheat | cytosol | 24.29 | 17.35 |
| TraesCS2A01G165100.1 | Wheat | cytosol | 23.93 | 17.14 |
| TraesCS2D01G172200.1 | Wheat | cytosol | 23.57 | 16.88 |
| PGSC0003DMT400073845 | Potato | cytosol | 38.57 | 16.56 |
| Solyc11g006170.1.1 | Tomato | nucleus | 38.21 | 16.49 |
| Solyc01g105780.2.1 | Tomato | nucleus | 39.29 | 15.34 |
| AT1G62970.1 | Thale cress | nucleus | 43.57 | 15.31 |
| TraesCS5D01G252200.1 | Wheat | cytosol, nucleus, plastid | 27.86 | 14.8 |
| TraesCS5A01G245400.1 | Wheat | cytosol, nucleus, plastid | 27.5 | 14.58 |
| PGSC0003DMT400083794 | Potato | nucleus | 38.57 | 14.54 |
| TraesCS5B01G242900.1 | Wheat | cytosol | 27.14 | 14.42 |
| HORVU5Hr1G069570.1 | Barley | nucleus | 27.86 | 14.29 |
Protein Annotations
| Gene3D:1.10.287.110 | MapMan:12.5.1.16.2 | EntrezGene:830813 | ProteinID:AED91408.1 | ArrayExpress:AT5G09540 | EnsemblPlantsGene:AT5G09540 |
| RefSeq:AT5G09540 | TAIR:AT5G09540 | RefSeq:AT5G09540-TAIR-G | EnsemblPlants:AT5G09540.1 | TAIR:AT5G09540.1 | EMBL:BT030004 |
| ProteinID:CAB89376.1 | InterPro:DnaJ_domain | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005829 | InterPro:IPR001623 | InterPro:IPR036869 | InterPro:J_dom_sf | RefSeq:NP_196516.1 | PFAM:PF00226 |
| PO:PO:0000293 | PFscan:PS50076 | PANTHER:PTHR45496 | UniProt:Q9LXB9 | SUPFAM:SSF46565 | UniParc:UPI00000A6F58 |
| SEG:seg | : | : | : | : | : |
Description
At5g09540 [Source:UniProtKB/TrEMBL;Acc:Q9LXB9]
Coordinates
chr5:-:2962057..2963441
Molecular Weight (calculated)
30982.9 Da
IEP (calculated)
4.490
GRAVY (calculated)
-0.437
Length
280 amino acids
Sequence
(BLAST)
(BLAST)
001: MVSDGGGENN RAEADQLLAT SEKLLASSDF HGAKTFAIRA CEADPSRTDA ADYILAIADT LLAGETTIGD SKVPDWYAVL RISRLTQSPE HVATQYRRLT
101: LLLKLNINRL PFADQALKLV SDAWYVLSDP PRKSIYDREL QLSQTGQSEK FQDSPLQSQA ETLENPTATS FWTACPYCFS LFEYPKGYEE CTLRCQQCRK
201: AFEAVKTQTP PVESNGEGVY FGSWAMFPVG LTSHPNTSNW SPISHLSVCT GQSSSDQQSN LKATPRNDDV DIYIAISDDD
101: LLLKLNINRL PFADQALKLV SDAWYVLSDP PRKSIYDREL QLSQTGQSEK FQDSPLQSQA ETLENPTATS FWTACPYCFS LFEYPKGYEE CTLRCQQCRK
201: AFEAVKTQTP PVESNGEGVY FGSWAMFPVG LTSHPNTSNW SPISHLSVCT GQSSSDQQSN LKATPRNDDV DIYIAISDDD
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.