Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 2
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra024289.1-P | Field mustard | nucleus | 65.3 | 66.01 |
| CDX84519 | Canola | nucleus | 64.44 | 62.95 |
| AT5G09540.1 | Thale cress | nucleus | 37.72 | 62.5 |
| Bra031921.1-P | Field mustard | cytosol | 49.57 | 62.33 |
| CDY31322 | Canola | cytosol | 49.78 | 61.93 |
| CDY58269 | Canola | nucleus | 65.3 | 60.36 |
| VIT_03s0017g00300.t01 | Wine grape | nucleus | 43.97 | 41.98 |
| KRH42098 | Soybean | nucleus | 39.44 | 40.22 |
| KRH49811 | Soybean | nucleus | 40.09 | 39.49 |
| CDY46799 | Canola | nucleus | 30.39 | 35.97 |
| KRH21766 | Soybean | nucleus | 37.93 | 35.27 |
| KRH10601 | Soybean | nucleus | 36.85 | 34.41 |
| GSMUA_Achr3P06790_001 | Banana | cytosol | 22.84 | 32.62 |
| AT2G01710.2 | Thale cress | mitochondrion | 24.35 | 31.83 |
| Zm00001d047214_P001 | Maize | extracellular | 24.78 | 28.97 |
| Solyc07g007230.2.1 | Tomato | nucleus | 26.51 | 28.87 |
| GSMUA_Achr10P... | Banana | cytosol | 26.08 | 28.74 |
| TraesCS4D01G156000.1 | Wheat | nucleus | 24.57 | 28.43 |
| HORVU4Hr1G039650.1 | Barley | nucleus | 24.35 | 28.39 |
| TraesCS4B01G160100.1 | Wheat | cytosol | 23.92 | 27.68 |
| EER92178 | Sorghum | nucleus | 23.92 | 27.54 |
| Zm00001d029409_P001 | Maize | nucleus, peroxisome, plastid | 23.49 | 27.53 |
| TraesCS4A01G160900.1 | Wheat | cytosol | 23.49 | 27.25 |
| PGSC0003DMT400073845 | Potato | cytosol | 37.07 | 26.38 |
| Solyc11g006170.1.1 | Tomato | nucleus | 36.85 | 26.35 |
| Os07t0620200-01 | Rice | cytosol, mitochondrion, nucleus | 21.98 | 25.76 |
| Os03t0392400-01 | Rice | nucleus | 22.41 | 25.68 |
| GSMUA_Achr1P21390_001 | Banana | cytosol | 21.98 | 25.31 |
| Solyc01g105780.2.1 | Tomato | nucleus | 37.72 | 24.41 |
| HORVU5Hr1G055620.1 | Barley | cytosol, nucleus, plastid | 15.52 | 24.32 |
| Os09t0463700-01 | Rice | nucleus | 19.4 | 24.19 |
| PGSC0003DMT400079004 | Potato | cytosol | 26.51 | 24.07 |
| KXG35797 | Sorghum | nucleus | 19.83 | 23.96 |
| PGSC0003DMT400083794 | Potato | nucleus | 38.36 | 23.96 |
| KXG36712 | Sorghum | cytosol | 21.98 | 23.45 |
| HORVU2Hr1G030250.2 | Barley | cytosol | 19.4 | 23.14 |
| Zm00001d047043_P001 | Maize | nucleus | 21.55 | 23.09 |
| Solyc11g006140.1.1 | Tomato | nucleus | 29.53 | 23.03 |
| Zm00001d022168_P001 | Maize | cytosol, mitochondrion, peroxisome | 21.55 | 22.62 |
| TraesCS2A01G165100.1 | Wheat | cytosol | 18.97 | 22.51 |
| TraesCS2B01G191300.1 | Wheat | cytosol | 18.97 | 22.45 |
| TraesCS2D01G172200.1 | Wheat | cytosol | 18.75 | 22.25 |
| EES14021 | Sorghum | nucleus | 21.12 | 22.17 |
| Zm00001d020762_P001 | Maize | nucleus | 19.4 | 20.45 |
| TraesCS5D01G252200.1 | Wheat | cytosol, nucleus, plastid | 21.55 | 18.98 |
| TraesCS5B01G242900.1 | Wheat | cytosol | 21.12 | 18.6 |
| TraesCS5A01G245400.1 | Wheat | cytosol, nucleus, plastid | 20.69 | 18.18 |
| HORVU5Hr1G069570.1 | Barley | nucleus | 20.91 | 17.77 |
| AT1G62970.1 | Thale cress | nucleus | 29.53 | 17.19 |
Protein Annotations
| Gene3D:1.10.287.110 | MapMan:12.5.1.16.2 | EntrezGene:836557 | ProteinID:AED97878.1 | ProteinID:AED97879.1 | ProteinID:AED97880.1 |
| EMBL:AK226295 | EMBL:AK316879 | ProteinID:ANM70330.1 | ProteinID:ANM70331.1 | ProteinID:ANM70332.1 | ArrayExpress:AT5G64360 |
| EnsemblPlantsGene:AT5G64360 | RefSeq:AT5G64360 | TAIR:AT5G64360 | RefSeq:AT5G64360-TAIR-G | EnsemblPlants:AT5G64360.7 | Unigene:At.28961 |
| Unigene:At.75346 | ProteinID:BAB09867.1 | EMBL:BT030382 | InterPro:DnaJ_domain | GO:GO:0000003 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 | GO:GO:0005829 | GO:GO:0007275 |
| GO:GO:0008150 | GO:GO:0009791 | GO:GO:0009908 | GO:GO:0009909 | InterPro:IPR001623 | InterPro:IPR036869 |
| InterPro:J_dom_sf | RefSeq:NP_001032136.1 | RefSeq:NP_001318874.1 | RefSeq:NP_001331951.1 | RefSeq:NP_001331952.1 | RefSeq:NP_201241.1 |
| RefSeq:NP_851265.1 | PFAM:PF00226 | PFscan:PS50076 | PANTHER:PTHR45496 | UniProt:Q9FMF3 | SMART:SM00271 |
| SUPFAM:SSF46565 | UniParc:UPI00000A27C3 | SEG:seg | : | : | : |
Description
AT5G64360 protein [Source:UniProtKB/TrEMBL;Acc:Q9FMF3]
Coordinates
chr5:-:25736326..25738667
Molecular Weight (calculated)
50476.0 Da
IEP (calculated)
4.760
GRAVY (calculated)
-0.408
Length
464 amino acids
Sequence
(BLAST)
(BLAST)
001: MVGGRGGVGG GGGNRVEADQ WLVTSEKLLA SSDLQGAKTF AIRACEADPT RAEAADYILA ICDILLAGET RLGDSNLPDW YAVLRLGRLA QNPEHVATQY
101: RRLALLLNPS VNRLPFADRA LKIVSDAWFV LSDPFKKSFY DRELQLSQLG QSGFHPQTQS HQNFQWEPSS STAVYPPPRS QSQAGTSADP MATSFWTACP
201: YCFVLFEYPK AYEECTLKCQ ECRRAFQAVT IPKPPVDKKD DEDVYFCSWA LFPLGFSGEF QAPSWSPISP LFACPLQKLD GEPKKRKEPG PPRIYYDDDD
301: IYVAISDGDD AGDDGDWQDV VQVNKKTNVG KGKETYVRSN KKHGVEEVQN VESISSASNH AVSIASNAAA VGSSTGVMSK PGSYITRKRM GTGAKNLGRL
401: DLNVEFSNEV EEPGVAGGGN AGNGIGSNRE VDNMEGIGFF EGLDEFLNSL PILSVVGDDK IKAT
101: RRLALLLNPS VNRLPFADRA LKIVSDAWFV LSDPFKKSFY DRELQLSQLG QSGFHPQTQS HQNFQWEPSS STAVYPPPRS QSQAGTSADP MATSFWTACP
201: YCFVLFEYPK AYEECTLKCQ ECRRAFQAVT IPKPPVDKKD DEDVYFCSWA LFPLGFSGEF QAPSWSPISP LFACPLQKLD GEPKKRKEPG PPRIYYDDDD
301: IYVAISDGDD AGDDGDWQDV VQVNKKTNVG KGKETYVRSN KKHGVEEVQN VESISSASNH AVSIASNAAA VGSSTGVMSK PGSYITRKRM GTGAKNLGRL
401: DLNVEFSNEV EEPGVAGGGN AGNGIGSNRE VDNMEGIGFF EGLDEFLNSL PILSVVGDDK IKAT
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.