Factsheet for Bra006121.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
nucleus 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra006122.1-P	Field mustard	cytosol, mitochondrion	16.06	4.21
Bra015343.1-P	Field mustard	cytosol	1.82	2.51
Bra001205.1-P	Field mustard	cytosol	2.19	2.01
Bra029594.1-P	Field mustard	cytosol	4.01	1.44
Bra023347.1-P	Field mustard	plastid	4.38	1.35
Bra036141.1-P	Field mustard	cytosol	3.28	1.2
Bra029593.1-P	Field mustard	cytosol	3.28	1.19
Bra016863.1-P	Field mustard	cytosol	2.19	1.0
Bra021687.1-P	Field mustard	cytosol	2.55	0.95
Bra025927.1-P	Field mustard	cytosol	3.28	0.91
Bra019338.1-P	Field mustard	cytosol	2.19	0.82
Bra022820.1-P	Field mustard	cytosol	2.19	0.79
Bra009514.1-P	Field mustard	plastid	2.19	0.79
Bra040281.1-P	Field mustard	cytosol	2.19	0.77
Bra005778.1-P	Field mustard	cytosol	2.19	0.75
HORVU5Hr1G097010.3	Barley	cytosol	1.82	0.68
TraesCS5A01G398200.1	Wheat	cytosol	1.82	0.66
TraesCS5B01G403300.1	Wheat	cytosol	1.82	0.65
TraesCS5D01G407700.1	Wheat	cytosol	1.82	0.64
Bra022999.1-P	Field mustard	cytosol	2.92	0.63
Bra015976.1-P	Field mustard	cytosol	2.19	0.62
Bra007408.1-P	Field mustard	cytosol	1.82	0.62
Bra005521.1-P	Field mustard	cytosol	1.82	0.58
Bra013806.1-P	Field mustard	cytosol	1.82	0.53
Bra021945.1-P	Field mustard	cytosol	2.19	0.48
Bra006812.1-P	Field mustard	cytosol, plastid	1.82	0.47
KXG34260	Sorghum	cytosol	1.46	0.47
GSMUA_Achr6P06270_001	Banana	cytosol	1.82	0.42
Bra026072.1-P	Field mustard	cytosol	1.46	0.36
Bra026726.1-P	Field mustard	cytosol	1.46	0.35
Bra031639.1-P	Field mustard	cytosol	1.46	0.35
Bra035125.1-P	Field mustard	cytosol	1.46	0.33
Bra013245.1-P	Field mustard	cytosol	1.09	0.33
Bra003603.1-P	Field mustard	cytosol	1.46	0.32
Os03t0401100-01	Rice	plasma membrane	0.36	0.16
Bra040282.1-P	Field mustard	cytosol	0.36	0.14
Bra003347.1-P	Field mustard	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:Bra006121.1	EnsemblPlants:Bra006121.1-P	EnsemblPlantsGene:Bra006121	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:CGLD27-like	PANTHER:PTHR34214	PANTHER:PTHR34214:SF1	PFAM:PD016444	PFAM:PF06799	SEG:seg
TMHMM:TMhelix	UniParc:UPI000253F968	UniProt:M4CPI3	MapMan:35.1	:	:

Description

AT5G11840 (E=9e-105) | unknown protein

Coordinates

chrA03:-:2100993..2102165

Molecular Weight (calculated)

30204.9 Da

IEP (calculated)

6.796

GRAVY (calculated)

-0.124

Length

274 amino acids

Sequence
(BLAST)

001: MAAATVLRHF TPISSSLKPP SRHHRRFLHH SLFPKLPSHS PPSLLKFGAE NSEPQPPPSL PETDCPVPPE QQPINEYQSL SSSFPFSWAS GELVEYSSRL
101: FLTGASFAFF VGLPVSWFGS VGPEYEPVKR ILAASSSGIF VVTLAVVRMY LGWAYVGNRL LSATVEYEET GWYDGQVWVK TPQVLARDRL LGSFSVKPVL
201: TRLKNTLVIL GLSLILVVNL GNSPIASSYK TYKDPRDRSS MPIPGAYNDE TARTFEPEAF CGEPSSDEPS SDLL

Best Arabidopsis Sequence Match ( AT5G11840.1 )
(BLAST)

001: MAATVLGHFS PITSSLKPPS RHRRFLHHNL SPKTPLQSSL IKFGAENSEP QPPRPLPETD CPVPPEQQPI NEYQSLSTSF PFSWASGDLI EYSTRLFLTG
101: ASFAFFVGLP VSWFGSIGPE YEPVKRILAA SSSGIFVVTL AVVRMYLGWA YVGNRLLSAT VEYEETGWYD GQVWVKTPEV LARDRLLGSF SVKPVLARLK
201: NTLVILGLSL ILVINLGDSP IATSYRTYRD PRDRSSLPIP GAYNDETART FEPEAFCGEP SSDLL

Arabidopsis Description

At5g11840 [Source:UniProtKB/TrEMBL;Acc:B6IDH6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.