Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX90315 | Canola | nucleus | 97.12 | 96.79 |
| Bra033600.1-P | Field mustard | endoplasmic reticulum | 35.25 | 66.67 |
| AT4G39160.2 | Thale cress | nucleus | 58.31 | 55.13 |
| GSMUA_Achr2P23110_001 | Banana | nucleus | 7.63 | 31.47 |
| HORVU6Hr1G080290.6 | Barley | nucleus | 12.71 | 28.41 |
| TraesCS6B01G361300.1 | Wheat | nucleus | 12.71 | 28.2 |
| TraesCS6D01G309500.4 | Wheat | nucleus | 12.37 | 27.44 |
| PGSC0003DMT400045728 | Potato | nucleus | 26.1 | 21.57 |
| KRH34776 | Soybean | nucleus | 18.14 | 21.49 |
| Solyc02g081640.2.1 | Tomato | nucleus | 24.41 | 20.43 |
| KRG92007 | Soybean | nucleus | 17.29 | 19.65 |
| TraesCS6A01G330400.1 | Wheat | nucleus, plastid | 14.07 | 16.5 |
| Zm00001d017507_P001 | Maize | nucleus | 14.24 | 15.82 |
| KXG24287 | Sorghum | nucleus | 19.83 | 15.0 |
| TraesCS1A01G314400.2 | Wheat | nucleus | 20.0 | 14.97 |
| TraesCS1D01G314900.1 | Wheat | nucleus | 20.0 | 14.97 |
| HORVU1Hr1G067100.2 | Barley | nucleus | 19.83 | 14.87 |
| TraesCS1B01G326700.2 | Wheat | nucleus | 19.49 | 14.59 |
| KRH77688 | Soybean | nucleus | 22.37 | 14.12 |
| Zm00001d035113_P001 | Maize | nucleus | 19.66 | 13.84 |
| OQU75762 | Sorghum | nucleus | 18.47 | 13.51 |
| KRH27726 | Soybean | nucleus | 21.69 | 13.5 |
| VIT_03s0038g04460.t01 | Wine grape | nucleus | 23.9 | 13.39 |
| Zm00001d017505_P003 | Maize | plastid | 19.32 | 10.04 |
| Os03t0840500-00 | Rice | cytosol, nucleus | 6.95 | 9.6 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.4.3.2 | MapMan:15.5.2.2 | EnsemblPlantsGene:Bra010701 | EnsemblPlants:Bra010701.1 | EnsemblPlants:Bra010701.1-P |
| ncoils:Coil | GO:GO:0000126 | GO:GO:0001026 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006359 | GO:GO:0006383 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| InterPro:Homeobox-like_sf | UniProt:M4D2K1 | PFAM:PF15963 | PANTHER:PTHR22929 | InterPro:SANT/Myb | SMART:SM00717 |
| SUPFAM:SSF46689 | InterPro:TFIIIB_B'' | UniParc:UPI000254696A | SEG:seg | : | : |
Description
AT4G39160 (E=1e-147) | DNA binding / transcription factor
Coordinates
chrA08:-:16047381..16050204
Molecular Weight (calculated)
66046.6 Da
IEP (calculated)
4.287
GRAVY (calculated)
-1.221
Length
590 amino acids
Sequence
(BLAST)
(BLAST)
001: MDLDFDDESA APAARAGAKF KPRGRPQPKK KQAQTTLSTD VAKEKLSTQS EHPVSLDASS AYPSNVSTSE TTVPDSGTIS QSTMGTISKE NVSGGASVLR
101: ACTNLNSEGK KCEDDTETAP AYPDDPRRQD SAAFGDFVTS ETDEVIDDQT QRMQTGEEEE ECDWNMETLD IVQEECVTSA YEQHTGKFQP KPRLLDTVIE
201: EEPESHYSVD DDTTGANPSE FMVNEESRND EFNINTTFHG DHQEDEHNIP EQAPNVLEQE HHVVSPSNND TVMGEGETQA NEAETGADKK GKKKRGRKKK
301: TTTSEEEPNK PPPETKKKFK HSSRRQKNTL DKELLETPDD EIKHLPIRDM LRLVAYRESL EKKEAKGAPV VPPTQESNTH ASEDNHYYSQ GFDAEDEFGM
401: EEGENHEAPV VKPDSPVNYQ TYMNKTPRTR WSKQDTQLFY EGIQEFGSNL SMVQQLFPER TRQQIKLKYK LEERKNPLKL NDALSTRSKK LTHYHNVIKK
501: LQEEAAAAKE GEEEEEEGEE AGEEAETTTD VPESVEPTKT EETERDGGVA GVKESDGGDV ENGVISDGGD EIDDNEGDDD DFWNSYKSEM
101: ACTNLNSEGK KCEDDTETAP AYPDDPRRQD SAAFGDFVTS ETDEVIDDQT QRMQTGEEEE ECDWNMETLD IVQEECVTSA YEQHTGKFQP KPRLLDTVIE
201: EEPESHYSVD DDTTGANPSE FMVNEESRND EFNINTTFHG DHQEDEHNIP EQAPNVLEQE HHVVSPSNND TVMGEGETQA NEAETGADKK GKKKRGRKKK
301: TTTSEEEPNK PPPETKKKFK HSSRRQKNTL DKELLETPDD EIKHLPIRDM LRLVAYRESL EKKEAKGAPV VPPTQESNTH ASEDNHYYSQ GFDAEDEFGM
401: EEGENHEAPV VKPDSPVNYQ TYMNKTPRTR WSKQDTQLFY EGIQEFGSNL SMVQQLFPER TRQQIKLKYK LEERKNPLKL NDALSTRSKK LTHYHNVIKK
501: LQEEAAAAKE GEEEEEEGEE AGEEAETTTD VPESVEPTKT EETERDGGVA GVKESDGGDV ENGVISDGGD EIDDNEGDDD DFWNSYKSEM
001: MDLDFDDQPS DHAAPAVRAG ARFKPKGRPQ PKKKQVSLST TQTTLSPDVA QEKLSTQSED LVPLDGSSEI PSNALPSETN VPDSGSINKS TIGTLSEENE
101: DAFPRGVHWS VKPSILRACN NVNLVGNRRD DGIEATTSFP DDPRTQDSAI FGDYVTPETG ADEGRVDMET LDIVQEEGTT SSYVQHTGKL QPKPRLLETV
201: VEEPEPHYSA GDTGYFPMGT NESEFMANVE SRNGFSTYED LQEEELNIPE APRETVGEME AQNASGGWEQ EEQGVSPCIN NTVTGEEENC MGNTVEEQSK
301: RESKTGKSKR ATSRKRKKTS EEPNKSSEKT EQKKFKHSSR RQKRTLEKEL LETPDHEIRS LPLRDMLRLV EYKEWMQKKE AKGAGVQPSQ ESNNMNGSGS
401: QYHSQGFDEE DEFGDFGIES SEYQENNVVK PDSPVNYQTY MNKTSRTRWS KEDTELFYEG IQEFGSNLSM IQQLFPERTR EQMKLKFKLE ERRNPLKLND
501: ALSSRSKHFT HFKNVIKKLQ QEAAAAKEGE EEEEAGAEAE TTDVPENEEP EKSEETERAS DGVAAGVKES DGGDVENGVR SDGGDECDDD EDFWNSYKSD
601: M
101: DAFPRGVHWS VKPSILRACN NVNLVGNRRD DGIEATTSFP DDPRTQDSAI FGDYVTPETG ADEGRVDMET LDIVQEEGTT SSYVQHTGKL QPKPRLLETV
201: VEEPEPHYSA GDTGYFPMGT NESEFMANVE SRNGFSTYED LQEEELNIPE APRETVGEME AQNASGGWEQ EEQGVSPCIN NTVTGEEENC MGNTVEEQSK
301: RESKTGKSKR ATSRKRKKTS EEPNKSSEKT EQKKFKHSSR RQKRTLEKEL LETPDHEIRS LPLRDMLRLV EYKEWMQKKE AKGAGVQPSQ ESNNMNGSGS
401: QYHSQGFDEE DEFGDFGIES SEYQENNVVK PDSPVNYQTY MNKTSRTRWS KEDTELFYEG IQEFGSNLSM IQQLFPERTR EQMKLKFKLE ERRNPLKLND
501: ALSSRSKHFT HFKNVIKKLQ QEAAAAKEGE EEEEAGAEAE TTDVPENEEP EKSEETERAS DGVAAGVKES DGGDVENGVR SDGGDECDDD EDFWNSYKSD
601: M
Arabidopsis Description
Homeodomain-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4JVA4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.