Factsheet for Bra013567.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, mitochondrion

Predictor Summary:

nucleus 2
mitochondrion 4
cytosol 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX79101	Canola	cytosol, mitochondrion	96.79	91.17
AT4G21880.1	Thale cress	cytosol	70.6	65.24
Bra029518.1-P	Field mustard	plastid	52.25	53.55
KRG88500	Soybean	cytosol	5.91	49.46
KRH25865	Soybean	cytosol	8.47	44.9
VIT_19s0014g05230.t01	Wine grape	cytosol	33.38	44.29
GSMUA_Achr1P26200_001	Banana	extracellular	19.26	42.25
PGSC0003DMT400049471	Potato	cytosol	23.36	42.23
KRH55647	Soybean	cytosol	24.78	41.59
KRH22239	Soybean	cytosol	24.9	41.28
Os02t0132600-02	Rice	cytosol	25.67	37.04
KRH27097	Soybean	cytosol, mitochondrion	35.82	36.95
Solyc07g064110.2.1	Tomato	plastid	40.31	36.94
KRH25868	Soybean	cytosol, nucleus, plastid	12.97	36.33
TraesCS6B01G124900.1	Wheat	cytosol, plastid	36.07	32.26
TraesCS6D01G087600.1	Wheat	cytosol, plastid	35.69	32.25
TraesCS6A01G096500.1	Wheat	cytosol, mitochondrion	35.56	32.13
HORVU6Hr1G017720.35	Barley	plastid	35.56	31.19
KRH55650	Soybean	mitochondrion, plastid	14.25	28.68
Zm00001d015156_P001	Maize	plastid	34.79	28.29
OQU84311	Sorghum	mitochondrion	35.17	27.99
KRG88502	Soybean	vacuole	13.48	27.85
GSMUA_Achr1P26220_001	Banana	plastid	15.02	27.46

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	EnsemblPlantsGene:Bra013567	EnsemblPlants:Bra013567.1	EnsemblPlants:Bra013567.1-P	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:IPR002885	InterPro:IPR011990	UniProt:M4DAQ7	PFAM:PF01535
PFAM:PF13041	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF623	InterPro:Pentatricopeptide_repeat	TIGRFAMs:TIGR00756
InterPro:TPR-like_helical_dom_sf	UniParc:UPI0002547173	:	:	:	:

Description

AT4G04790 (E=2e-227) | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G21880.1); Has 8701 Blast hits to 4047 proteins in 142 species: Archae - 4; Bacteria - 18; Metazoa - 161; Fungi - 114; Plants - 8118; Viruses - 0; Other Eukaryotes - 286 (source: NCBI BLink).

Coordinates

chrA01:+:6371210..6375569

Molecular Weight (calculated)

88779.7 Da

IEP (calculated)

5.145

GRAVY (calculated)

-0.287

Length

779 amino acids

Sequence
(BLAST)

001: MGLRKAKHKL SAIFRVAMRN AGRKPPDAAN TAEAVAGEYP EMDFIGQGTE SWGSFPDILS PLKSFIDPSN TVQQGVKPRK RKDDNDFSSK KKTLELSAFL
101: SGKLPPSTKK QHMARGRLQF ETFKKNQSQL MKKLSKGCAR KLGQETTFEV LFKMGKEAGE REYNARIQVC VENARRSNDA EYVLDQVGKA IEYLKEMRQG
201: GFSIKEGTYG PFFRYLVDME MVEEFQIFKE FIREASPESV ERLVYYEMLL WIQVNDEEKI RELCNTVDDG GRISLSTLQE YHLVALCEKD RKEDLQKLLE
301: IVDITKFSSP EVLKSVFEYL GNSLLEAVAM KLLLELRDSG EVETVSNLIF SYASCIPNSS VDDAILKFNN LHEELDIVPS SSSYEKLVNH LCCSSEVAIA
401: LDVVENMCEE GLEISENILH SLLDAIAQIL EFDLVQRIHS IMSNKCVKPN SETFRRSISL CIRIKDFEGA YNMLGNLKNF NLAPNSSMYN SIMAGYFREK
501: NVNKAFMVLK EMKEADVKPD SVTFSYLINY CDQEEAIAEY YKEMKEAGVQ ASKHIYMSLI KAYASCKQFE KAKQVLMDQD VPTKDHNELK SVLIHALASN
601: GNITDALSIY EEMKEAGCHV DPKTMITLID HADSNEELAT LAQLAHELND SKYWIDGLFK IVLFAVRNNK SCSILDLLKE TKNDLSKDDI ALEYWLEEVF
701: RSIAETEPSD VKLGLDLLSF MKEELGLCPS RKCLDFLLHA CVNAKDKQTA LVVWKEYQFA ELPYNVLNYL RQVLFYLFL

Best Arabidopsis Sequence Match ( AT4G21880.1 )
(BLAST)

001: MALKAKKSLS AIFRFAMRNA AKTAEVEAKA VAGDSLISDT GPVSMSLIPD FLSSLKSPED SSNIGQDFGE PALAGQVSSA LDVKSIGYNL LRERNGEKVF
101: PKNVLETLDL LSRKGCSSQK PKQASRGRML TENYQNKQSE IMEKLAKGCV RKLGTETMFE VLTKMGKEAG EKEYNAMTKL CIQRARRSND AEYALDQIGK
201: AIEHLKEMRQ LGFSIGEGAY GPFFKYLVDM EMVAEFQILK DFIKEACPES CGRLVYYEML LWIQVNDEEK IHKLCNKVDD SGLSLSILQE YYLVALCEKD
301: SKENFQKLLE IVDITTVSSP DALKSIFGYL GKSLLESVAM KLLWELRDCR KDGVETVSNL IFSYATCIPN STVEDAIFKF NKLHEELDIV PSSTSYENLV
401: SYLCGSNEVV TALDIVENMC EAGLVISANI LHSLLQAIEQ ILEFNLVQRI YSIMSNKSVK PNSETFRKSI NLCIRIKDFE GAYNMLGNLK NFNLAPNSSM
501: YNSIMAGYFR EKKVNSALKV LKEMKEADVK PDSVTFSYLI NYCGEEATIA KYYKEMKQAG VEVNKHVYMS LVKAYASCGQ FEKAKQVLMD LEVPAKDHNE
601: LKSVLISALA SNGNITEALS IYEEMKKLRC PVEPKAILSL IENSDSNAEL GTLVELTHEL RDSKFWIDGF FKIIVFAVRN NRSSSILDLL EQTKNHLSKD
701: DVGVEYWFEE VFKSIAETES SDVKVGLDLV SFMKEELELC PSRKCLDFLL HACVNAKDKQ SALLVWEEYQ CAELPYNVIN YLRMYQVLVA AGDSKSAEAI
801: VSKIPNDDKD VKCIIKESRI VFTPKLKKKK KKSKQKGLSL QAK

Arabidopsis Description

Pentatricopeptide repeat-containing protein At4g21880, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:O49711]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.