Factsheet for Bra019188.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 3
mitochondrion 1
cytosol 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY11056	Canola	nucleus, plastid	93.25	97.17
AT4G25120.1	Thale cress	nucleus	82.72	82.21
GSMUA_Achr4P26310_001	Banana	cytosol	5.44	69.66
Solyc03g093850.1.1	Tomato	cytosol	32.72	61.25
VIT_16s0013g00300.t01	Wine grape	nucleus	50.7	53.47
Solyc03g093840.1.1	Tomato	endoplasmic reticulum	10.88	52.32
GSMUA_Achr4P26320_001	Banana	cytosol, mitochondrion, nucleus	41.32	51.64
Os07t0492100-01	Rice	plastid	50.35	49.27
EER97255	Sorghum	plastid	50.44	48.52
TraesCS2A01G226500.1	Wheat	plastid	49.56	47.32
TraesCS2D01G237200.2	Wheat	plastid	49.56	47.04
HORVU2Hr1G051300.27	Barley	plastid	49.04	46.01
Zm00001d006443_P001	Maize	nucleus	49.21	45.87
KRH33265	Soybean	endoplasmic reticulum, plasma membrane, vacuole	7.28	37.73
TraesCS2B01G254500.1	Wheat	plastid	4.47	13.82

Protein Annotations

Gene3D:1.10.10.160	Gene3D:1.10.486.10	Gene3D:3.40.50.300	MapMan:35.1	EnsemblPlantsGene:Bra019188	EnsemblPlants:Bra019188.1
EnsemblPlants:Bra019188.1-P	ncoils:Coil	InterPro:DExx_box_DNA_helicase_dom_sf	InterPro:DNA_helicase_UvrD-like_C	InterPro:DNA_helicase_UvrD/REP	GO:GO:0000166
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003678	GO:GO:0003824	GO:GO:0004003
GO:GO:0005488	GO:GO:0005524	GO:GO:0006139	GO:GO:0006259	GO:GO:0006310	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	GO:GO:0032508	GO:GO:0036292
GO:GO:0043138	InterPro:IPR013986	InterPro:IPR014016	InterPro:IPR014017	UniProt:M4DRP5	InterPro:P-loop_NTPase
PFAM:PF00580	PFAM:PF13361	PFscan:PS51198	PFscan:PS51217	PANTHER:PTHR11070	PANTHER:PTHR11070:SF2
SUPFAM:SSF52540	UniParc:UPI00025410BE	InterPro:UvrD-like_ATP-bd	InterPro:UvrD/AddA_N	SEG:seg	:

Description

AT4G25120 (E=4e-300) | ATP binding / ATP-dependent DNA helicase/ DNA binding / hydrolase

Coordinates

chrA03:+:25797550..25804795

Molecular Weight (calculated)

127939.0 Da

IEP (calculated)

6.841

GRAVY (calculated)

-0.519

Length

1140 amino acids

Sequence
(BLAST)

0001: MENHPPNRGM WNQEQSHTTR ISQCFRIAKR PSENAANSPT PFPKRSKESM GTESISHRSS FKRTPLMELS ANTPPHKRFK PGFESSRVGM CIPAPDFSLD
0101: KEVSADDRVS SDPFVTPLKD ESVRVSLSYG GGCSTSSLLD DEIDDSILEE IDAICEQSVR KAACQTPNTS MTETPSRDYQ SSSSLLDDDI DDSVLEEIDA
0201: ICEESARKIA CQTPSTTSMT QTPSKDNKSS DLEGGLDSRG VKMFKPDSNV KLEFNKETSV AADPALITSM PEECSKYMQS LNDRQRDAAC SDISTPLMVI
0301: AGPGSGKTST MVGRVLVLLN EGLQPSNILA MTFTTAATAE MRERIGKSAG KKAAKEITIS TFHSFSLQLC RMHADKLQRT SEFSVYGHGQ QRRAIIEAVR
0401: LYEEGKNGSS TSAACESAEG HSGAGAGAVC PEYAKDRSKK WQKYVTQAKA SGRTPEECRK MGNEIGAKIL GNYSDILKAC DALDYHDLIS CSVTLLSDFP
0501: EVFKECQDTW KAIIVDEFQD TSTMQYKLLR MLGSHNHITI VGDDDQSIFG FNGADSSGFD SFRRDFPNYK EITVKECHNE EAQCAFVIDK IIEITNDASA
0601: PCCSHGDIAI LYRRQVSGKV FQNAFRQRKI PFNVHGVAFY RKKVVRVILA MLRTTFSECD DTSYRRVFKA LLPFEKEEKK RVIDHIDKIS TSRKCSFIIA
0701: ANDIFSAKIS GTFKRNQLTQ GRKVFQTLDM VAKLVDREQS LSAVVTCVAN MIPQKYLLEQ RAVVDNDGGK LLNEDNDLRS VLQYLMDDVA EFLSTHCTTT
0801: GEEVDAIKKK KGCNQLNSFI NYISERETEN FRLRRHDNQN SVTLTTIHQS KGLEWDVVFI IKANDNEIPL LHESNGTASE GGASLEEERR LLYVAMTRAR
0901: KKLFFLYVTV DSNWQVLQPS RFLKEIPSHL LQGDLSINDC RQVHQNLPNK TEQSVSDFGT ELKHEDNKPT DKNMMNIPVD DATEESLEAA CALNGNNFLK
1001: RFDVEARSVV SHLFHNWAKK QAFQDPKRLI DKVRFVIGER LAIKKEKHKD VLRALKSSLT SDEAFQYAEH VLRWEQLPAD TRAHIMREKQ EHFQKLRIEN
1101: SMGTSEATSK QIAFLHSLGC TVVPTSRLHA SRLIEQYKSL

Best Arabidopsis Sequence Match ( AT4G25120.1 )
(BLAST)

0001: MENLPPNRGM WNQEYSHGRI SQSFRSAKPL LDRKRPIENA PNSSNPLPQR MKESMDTESV SHNINFNSTP LMELSANTPY KRLKPEIESY ADGHPCGLRT
0101: PPPRFDLDKE IINGFQTDIY ADVGSLSEAF VTPLKEPERV TLSNGCSTSS ILDDDFDDSI LEEIDLICEQ SARKAACQTP TTSIYQTPSK DNKSSDPKAS
0201: LDFRDVEKFE PDSNVKLKLD EETPTIAADP ALLNSMPDEC SKYMLSLNDR QRDAACSNIS TPLMVIAGPG SGKTSTMVGR VLVLLNEGLL PSNILAMTFT
0301: KAATSEMRER IGKSAGKKAA KDITISTFHS FSLQLCRMHA DKLQRTSEFS VYGHGQQRRA IIEAVRLYEE EKKNGSKTSV PCESGEGLNG AGAGAVCPEY
0401: AKDLSKKWQK FVTQGKASGK SPEQCRKMGN EIGAKILGNY NDILKACDAL DYHDLISCSV TLLSDFPEVF KECQDTWKAI IVDEFQDTST MQYKLLRMLG
0501: SHNHITIVGD DDQSIFGFNG ADSSGFDSFR RDFPNYKEVR LIKNYRSSRH IVEAASSIIK NNTKRCQSKS ISSENSQGSK ITVKECHNEE AQCAYVIDKI
0601: IEITNDGSTP CCSHGDIAIL YRRQVSGKVF QNAFRQRKIP FNVHGVAFYR KKVVQVILAM LKTTFSECDD ASYRRVFKAL LPFEKEEKKR IIEHIEKIST
0701: SRKCSFISAA SDIFNAKISG TFKRSQLTQG RKVLQTLDMV AKLVDREQSL SAVVTCVANM IPQKYLLEQR AVVDNDGGKL LNEDNDLRSV LQYLMDDVAE
0801: FISTHCTTTE EEDAIKEKKG CNQLHSFINY ISERETENFR SRRRDNENSV TLTTIHQSKG LEWDIVFIVK ANENEIPLLH ESNGNASESG TSLEEERRLL
0901: YVAMTRARKK LFFLYVTVDS NWQVLQPSRF LKEIPGHLLQ GDMSVNDCRK VHENLPNKTE QSVSSFGTDI KHEESKLTDN DVMNIPEDYA SEESIAAYAL
1001: NGNNFLKRFD VEVRSVVSHL FHNWAKKQAF QEPKRLIDKV RFVIGERLAI KKNKHKDVLR ALKSSLTSEE AFQYAEHVLR WEQLPADTRA HIVREKQEHF
1101: QKLRIENSMG TSEATSKQIA FLHSLGCTVV PTSRLHASRL IEQYKSL

Arabidopsis Description

SRS2ATP-dependent DNA helicase SRS2-like protein At4g25120 [Source:UniProtKB/Swiss-Prot;Acc:D1KF50]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.