Factsheet for Bra022108.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 4
mitochondrion 4
cytosol 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY40567	Canola	mitochondrion	80.65	92.21
CDY28971	Canola	mitochondrion	83.65	89.77
Bra022109.1-P	Field mustard	cytosol	45.23	66.4
Bra024960.1-P	Field mustard	cytosol, mitochondrion, nucleus	57.77	63.86
AT5G47150.1	Thale cress	cytosol	54.5	60.98
Bra024959.1-P	Field mustard	nucleus	34.88	34.59
Bra009408.1-P	Field mustard	nucleus	20.71	14.84
Bra030212.1-P	Field mustard	nucleus	30.25	14.02
Bra006226.1-P	Field mustard	nucleus	22.34	13.71
Bra005362.1-P	Field mustard	nucleus	15.26	13.69
Bra028776.1-P	Field mustard	nucleus	23.43	13.54
Bra009409.1-P	Field mustard	nucleus	23.43	12.93
Bra005829.1-P	Field mustard	nucleus	22.62	12.87
Bra016018.1-P	Field mustard	nucleus	23.16	12.56
Bra021840.1-P	Field mustard	nucleus, plastid	20.71	11.93
Bra007048.1-P	Field mustard	nucleus	19.35	11.25
Bra005511.1-P	Field mustard	plastid	17.98	10.77
Bra004258.1-P	Field mustard	nucleus	21.53	8.6
Bra025949.1-P	Field mustard	nucleus	20.71	8.51
Bra033710.1-P	Field mustard	nucleus	5.99	2.93
Bra031976.1-P	Field mustard	nucleus	2.72	2.9
Bra036004.1-P	Field mustard	nucleus	4.63	2.72
Bra032148.1-P	Field mustard	nucleus	7.08	1.9
Bra039210.1-P	Field mustard	plastid	1.09	1.31
Bra040197.1-P	Field mustard	endoplasmic reticulum, plasma membrane, vacuole	2.72	1.06
Bra001104.1-P	Field mustard	nucleus	1.63	0.79

Protein Annotations

Gene3D:2.30.280.10	MapMan:35.1	EnsemblPlantsGene:Bra022108	EnsemblPlants:Bra022108.1	EnsemblPlants:Bra022108.1-P	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	InterPro:IPR003105	InterPro:IPR036987	UniProt:M4E011
PFAM:PF02182	PFscan:PS51015	PANTHER:PTHR22884	PANTHER:PTHR22884:SF458	InterPro:PUA-like_sf	SMART:SM00466
InterPro:SRA-YDG_sf	InterPro:SRA_YDG	SUPFAM:SSF88697	UniParc:UPI000254612D	:	:

Description

AT5G47150 (E=3e-095) | YDG/SRA domain-containing protein

Coordinates

chrA02:+:19446368..19447471

Molecular Weight (calculated)

41090.5 Da

IEP (calculated)

10.130

GRAVY (calculated)

-0.509

Length

367 amino acids

Sequence
(BLAST)

001: MNGSRKRSIV YAIRDYPLGC GTHPQRSIKI PRTSDVKQED PAGFKISVRD CDVAAPTRER IGLKQEPAAF RYSLPDRVLA APRFKGACSR QEAAFRSSVH
101: DYAVAAPTPK GTCLKQEPAF RNSHHAPVVA APRFKEASSK QEPAFRSSDQ HGLTPREQVL EVLRLFKDVF RQLDRDKQAR LLGGDLFDAT ARIDIRTLDV
201: LEKMGKQVNT EKRIGLVPGV NVGDEFQYKT ELRLVGLHFK TMCGIDYMNV GDVKLATSIV SSEGYGYSDK FGAGVVVYTG EGGNVVSKEK KTEDQRLVKG
301: NLALANSMRK KSLVRVIRGE ERLDKKGKRY VYDGLYLVDK YWLEKEVRGT TVYKFKLCKV PGQPPLC

Best Arabidopsis Sequence Match ( AT5G47150.1 )
(BLAST)

001: MSQKRSLVFA IRDFPPGCGT HIDVSSSLNH PAEKAFKHPR TGDVSGENLS FAEAKPEGTC LKRESADQDH IFAAPEHNAK REPAGQDHVV AATTVAYATS
101: SHRQKVEIGN SDCDPTPREK VLEVLSLFKQ VYNQLDRDKK ARRGGDFLDA TSRIDLKTLT VLEKMGKQVN TEKRIGSVPG INIGDVFQYK TELRVVGLHS
201: KPMCGIDYIK LGDDRITTSI VASEGYGYND TYNSGVMVYT GEGGNVINKQ KKTEDQKLVK GNLALATSMR QKSQVRVIRG EERLDRKGKR YVYDGLYMVE
301: EYWVERDVRG KSVYKFKLCR IPGQLPLT

Arabidopsis Description

YDG domain-containing protein At5g47150 [Source:UniProtKB/Swiss-Prot;Acc:Q9FHI0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.