Factsheet for Bra022109.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
cytosol 2
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY28970	Canola	cytosol	100.0	100.0
Bra024960.1-P	Field mustard	cytosol, mitochondrion, nucleus	73.2	55.12
AT5G47150.1	Thale cress	cytosol	61.6	46.95
Bra022108.1-P	Field mustard	mitochondrion	66.4	45.23
Bra024959.1-P	Field mustard	nucleus	46.0	31.08
Bra009408.1-P	Field mustard	nucleus	31.6	15.43
Bra005362.1-P	Field mustard	nucleus	24.0	14.67
Bra006226.1-P	Field mustard	nucleus	34.0	14.21
Bra005829.1-P	Field mustard	nucleus	34.8	13.49
Bra028776.1-P	Field mustard	nucleus	34.0	13.39
Bra030212.1-P	Field mustard	nucleus	40.8	12.88
Bra009409.1-P	Field mustard	nucleus	33.6	12.63
Bra016018.1-P	Field mustard	nucleus	33.6	12.41
Bra007048.1-P	Field mustard	nucleus	31.2	12.36
Bra021840.1-P	Field mustard	nucleus, plastid	31.2	12.24
Bra005511.1-P	Field mustard	plastid	26.4	10.77
Bra004258.1-P	Field mustard	nucleus	30.0	8.16
Bra025949.1-P	Field mustard	nucleus	28.8	8.06
Bra033710.1-P	Field mustard	nucleus	8.8	2.93
Bra036004.1-P	Field mustard	nucleus	6.4	2.56
Bra031976.1-P	Field mustard	nucleus	3.2	2.32
Bra032148.1-P	Field mustard	nucleus	10.8	1.98
Bra039210.1-P	Field mustard	plastid	2.0	1.63
Bra001104.1-P	Field mustard	nucleus	2.4	0.79
Bra040197.1-P	Field mustard	endoplasmic reticulum, plasma membrane, vacuole	2.4	0.64

Protein Annotations

Gene3D:2.30.280.10	MapMan:35.1	EnsemblPlantsGene:Bra022109	EnsemblPlants:Bra022109.1	EnsemblPlants:Bra022109.1-P	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	InterPro:IPR003105	InterPro:IPR036987	UniProt:M4E012
PFAM:PF02182	PFscan:PS51015	PANTHER:PTHR22884	PANTHER:PTHR22884:SF458	InterPro:PUA-like_sf	SMART:SM00466
InterPro:SRA-YDG_sf	InterPro:SRA_YDG	SUPFAM:SSF88697	UniParc:UPI000254612E	:	:

Description

AT5G47150 (E=3e-081) | YDG/SRA domain-containing protein

Coordinates

chrA02:+:19451387..19452139

Molecular Weight (calculated)

28263.7 Da

IEP (calculated)

8.378

GRAVY (calculated)

-0.545

Length

250 amino acids

Sequence
(BLAST)

001: MNPSQKRPVV YAGDVVVDHA AANSEPVGVS LGEDHVPTPR EKVHEVLRVF KEVFTQLDRE KQARRGGDLY EATSRIDLKT QVFLEKEGKH VNTPNRIGQV
101: PGIEVGDEFQ YKAELRVIGL HFRIMSGIDY VEVEGVKLAT SIVSSERYDF DDKFDADVVI YTGEGGNVIN KEKNAEDQKM IKGNLALANS MRHKREVRVI
201: RGDERWDGKG KHYVYVGLYL VDKYWLEKGA SGKSVYKFKL CRIPGQPPLT

Best Arabidopsis Sequence Match ( AT5G47150.1 )
(BLAST)

001: MSQKRSLVFA IRDFPPGCGT HIDVSSSLNH PAEKAFKHPR TGDVSGENLS FAEAKPEGTC LKRESADQDH IFAAPEHNAK REPAGQDHVV AATTVAYATS
101: SHRQKVEIGN SDCDPTPREK VLEVLSLFKQ VYNQLDRDKK ARRGGDFLDA TSRIDLKTLT VLEKMGKQVN TEKRIGSVPG INIGDVFQYK TELRVVGLHS
201: KPMCGIDYIK LGDDRITTSI VASEGYGYND TYNSGVMVYT GEGGNVINKQ KKTEDQKLVK GNLALATSMR QKSQVRVIRG EERLDRKGKR YVYDGLYMVE
301: EYWVERDVRG KSVYKFKLCR IPGQLPLT

Arabidopsis Description

YDG domain-containing protein At5g47150 [Source:UniProtKB/Swiss-Prot;Acc:Q9FHI0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.