Factsheet for Bra024959.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY33518	Canola	nucleus	90.0	91.48
Bra022109.1-P	Field mustard	cytosol	31.08	46.0
AT5G47160.1	Thale cress	mitochondrion	50.0	44.58
Bra024960.1-P	Field mustard	cytosol, mitochondrion, nucleus	36.76	40.96
Bra022108.1-P	Field mustard	mitochondrion	34.59	34.88
Bra005362.1-P	Field mustard	nucleus	16.76	15.16
Bra009408.1-P	Field mustard	nucleus	20.27	14.65
Bra005829.1-P	Field mustard	nucleus	24.32	13.95
Bra030212.1-P	Field mustard	nucleus	29.73	13.89
Bra016018.1-P	Field mustard	nucleus	24.59	13.44
Bra028776.1-P	Field mustard	nucleus	22.97	13.39
Bra021840.1-P	Field mustard	nucleus, plastid	22.97	13.34
Bra009409.1-P	Field mustard	nucleus	22.97	12.78
Bra006226.1-P	Field mustard	nucleus	20.27	12.54
Bra007048.1-P	Field mustard	nucleus	20.27	11.89
Bra005511.1-P	Field mustard	plastid	18.38	11.09
Bra025949.1-P	Field mustard	nucleus	21.62	8.96
Bra004258.1-P	Field mustard	nucleus	21.62	8.71
Bra036004.1-P	Field mustard	nucleus	4.86	2.88
Bra033710.1-P	Field mustard	nucleus	5.68	2.8
Bra031976.1-P	Field mustard	nucleus	2.43	2.61
Bra032148.1-P	Field mustard	nucleus	7.03	1.9
Bra040197.1-P	Field mustard	endoplasmic reticulum, plasma membrane, vacuole	3.51	1.38
Bra039210.1-P	Field mustard	plastid	0.81	0.98
Bra001104.1-P	Field mustard	nucleus	1.35	0.66

Protein Annotations

Gene3D:2.30.280.10	MapMan:35.1	EnsemblPlantsGene:Bra024959	EnsemblPlants:Bra024959.1	EnsemblPlants:Bra024959.1-P	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	InterPro:IPR003105	InterPro:IPR036987	UniProt:M4E853
PFAM:PF02182	PFscan:PS51015	PANTHER:PTHR22884	PANTHER:PTHR22884:SF458	InterPro:PUA-like_sf	SMART:SM00466
InterPro:SRA-YDG_sf	InterPro:SRA_YDG	SUPFAM:SSF88697	UniParc:UPI000253FAF0	SEG:seg	:

Description

AT5G47160 (E=7e-051) | YDG/SRA domain-containing protein

Coordinates

chrA06:-:24399658..24400770

Molecular Weight (calculated)

41398.5 Da

IEP (calculated)

10.683

GRAVY (calculated)

-0.681

Length

370 amino acids

Sequence
(BLAST)

001: MRSLSDKKKR VSAVRDFPYG CGTRSVQNQR SVNGREVVQA AHEPSGVAYH HRPACPVNEA DSLDEIMKKA GFNVPARSVV DRGRSVSSYS KSCGSKVKPL
101: SSEEASRLIA SQSRRRQLSH SHSHSSTMEK QRSSPENGNA TALRAKSQRL GINPVTRQNQ ITKALTPREK VQKVLRIFKL VFKALNKDKP GRHYEARAIL
201: MNHEMHVNDK KMIGRVPGIE IGDKFQYKSE LNLIGLHFYI RGGIDYITRK GGLKLATSII SSEGNGYTDR FNSDVMIYSG QGGNLTSKDQ TVVKDQKLET
301: GNLALANSVE AKNPVRVIRG VKDSRGKCYV YDGLYLVQEY WREKGRGGSV VFRFKLCRVP GQDSTNLRYH

Best Arabidopsis Sequence Match ( AT5G47160.2 )
(BLAST)

001: MMMTQRISPS NKRRRVSFVR DFPQFSVKDE SDIGGDDVAT IKENLDGKED SNCVGVAYRD HHRPKEESFD SIMKKAGFNV ANGNLGNGKF PPSKRNVPLP
101: CEGKVQPLSV EEGIKLMAYE SQRRRCFGKP LVSTKVVQKH RYSPAKKKLS NATALRVRHS PMKKLSNASR LRANAHRPTQ HKDERRSGVL SVIQRNRLSK
201: DLTPRQKVQE VLRIFTLVFD ELDRNKAARR GGSETAKSRI DYQTWTILRE MGMQVNSQKR IGSVPGIKVG DKIQFKAALS VIGLHFGIMS GIDYMYKGNK
301: EVATSIVSSE GNDYGDRFIN DVMIYCGQGG NMRSKDHKAI KDQKLVGGNL ALANSIKEKT PVRVIRGERR LDNRGKDYVY DGLYRVEKYW EERGPQGNIL
401: FKFKLRRTCQ PYVDF

Arabidopsis Description

YDG domain-containing protein At5g47160 [Source:UniProtKB/Swiss-Prot;Acc:Q9LVU3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.