Factsheet for Bra024960.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, cytosol, mitochondrion

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY33517	Canola	cytosol, mitochondrion, nucleus	100.0	100.0
CDX77744	Canola	cytosol	98.19	98.19
Bra022109.1-P	Field mustard	cytosol	55.12	73.2
Bra022108.1-P	Field mustard	mitochondrion	63.86	57.77
AT5G47150.1	Thale cress	cytosol	56.33	57.01
Bra024959.1-P	Field mustard	nucleus	40.96	36.76
Bra009408.1-P	Field mustard	nucleus	23.8	15.43
Bra028776.1-P	Field mustard	nucleus	26.51	13.86
Bra005362.1-P	Field mustard	nucleus	16.87	13.69
Bra030212.1-P	Field mustard	nucleus	32.53	13.64
Bra005829.1-P	Field mustard	nucleus	25.9	13.33
Bra009409.1-P	Field mustard	nucleus	26.2	13.08
Bra006226.1-P	Field mustard	nucleus	22.89	12.71
Bra016018.1-P	Field mustard	nucleus	25.6	12.56
Bra007048.1-P	Field mustard	nucleus	22.59	11.89
Bra021840.1-P	Field mustard	nucleus, plastid	21.99	11.46
Bra005511.1-P	Field mustard	plastid	19.88	10.77
Bra025949.1-P	Field mustard	nucleus	23.8	8.85
Bra004258.1-P	Field mustard	nucleus	23.8	8.6
Bra033710.1-P	Field mustard	nucleus	6.63	2.93
Bra036004.1-P	Field mustard	nucleus	5.12	2.72
Bra031976.1-P	Field mustard	nucleus	2.71	2.61
Bra032148.1-P	Field mustard	nucleus	8.43	2.05
Bra039210.1-P	Field mustard	plastid	1.2	1.31
Bra040197.1-P	Field mustard	endoplasmic reticulum, plasma membrane, vacuole	2.71	0.96
Bra001104.1-P	Field mustard	nucleus	2.11	0.93

Protein Annotations

Gene3D:2.30.280.10	MapMan:35.1	EnsemblPlantsGene:Bra024960	EnsemblPlants:Bra024960.1	EnsemblPlants:Bra024960.1-P	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	InterPro:IPR003105	InterPro:IPR036987	UniProt:M4E854
PFAM:PF02182	PFscan:PS51015	PANTHER:PTHR22884	PANTHER:PTHR22884:SF458	InterPro:PUA-like_sf	SMART:SM00466
InterPro:SRA-YDG_sf	InterPro:SRA_YDG	SUPFAM:SSF88697	UniParc:UPI000253FAF1	:	:

Description

AT5G47150 (E=1e-095) | YDG/SRA domain-containing protein

Coordinates

chrA06:-:24403770..24404768

Molecular Weight (calculated)

37281.1 Da

IEP (calculated)

9.298

GRAVY (calculated)

-0.807

Length

332 amino acids

Sequence
(BLAST)

001: MDRARKRPIV YAIRDFPPGC GTAPSNVPDK DHFKNPRTSD DVVVENQSPD HSDADSEPSG ASLIEEQKFR TSKHDRGLKQ ESPLPSSYHG RVLGASKHKG
101: SCSKQEPESQ HSDHVVAAPP TPREKVLEVL RAFKDVYREL DRNKQARRGG DSFDATARID IKAQAFLESE GRHVNTEKRI GQVPGVNIGD EFQYKTELRL
201: VGLHFKTMCG IDYMEVGGVK YATCIVASEG YGYNDKFDAG VVIYTGEGGN VISKHENKTE DQKMLKGNLA LANSMRHKTE VRVIRGMERW DGKGKRYVYD
301: GLYLVDKYWL EKGVSGKSMY KFKLCKIPGQ PR

Best Arabidopsis Sequence Match ( AT5G47150.1 )
(BLAST)

001: MSQKRSLVFA IRDFPPGCGT HIDVSSSLNH PAEKAFKHPR TGDVSGENLS FAEAKPEGTC LKRESADQDH IFAAPEHNAK REPAGQDHVV AATTVAYATS
101: SHRQKVEIGN SDCDPTPREK VLEVLSLFKQ VYNQLDRDKK ARRGGDFLDA TSRIDLKTLT VLEKMGKQVN TEKRIGSVPG INIGDVFQYK TELRVVGLHS
201: KPMCGIDYIK LGDDRITTSI VASEGYGYND TYNSGVMVYT GEGGNVINKQ KKTEDQKLVK GNLALATSMR QKSQVRVIRG EERLDRKGKR YVYDGLYMVE
301: EYWVERDVRG KSVYKFKLCR IPGQLPLT

Arabidopsis Description

YDG domain-containing protein At5g47150 [Source:UniProtKB/Swiss-Prot;Acc:Q9FHI0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.