Factsheet for Bra027040.1-P

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

plasma membrane 5
extracellular 7
endoplasmic reticulum 5
golgi 5
vacuole 6
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	plastid, secretory
BaCelLo:	secretory
EpiLoc:	vacuole
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY70376	Canola	extracellular	75.82	81.12
CDY12951	Canola	extracellular	72.88	80.8
AT1G62500.1	Thale cress	extracellular	74.51	76.77
KRH04104	Soybean	extracellular, plasma membrane	33.66	57.87
KRH57376	Soybean	plasma membrane	33.66	57.54
GSMUA_Achr4P26830_001	Banana	plastid	23.86	55.3
VIT_02s0154g00310.t01	Wine grape	extracellular, plasma membrane	41.5	52.26
PGSC0003DMT400093516	Potato	plastid	37.58	50.22
Solyc08g078890.1.1	Tomato	extracellular, golgi, plasma membrane	44.44	46.58
Bra001852.1-P	Field mustard	extracellular	35.95	42.15
Bra037196.1-P	Field mustard	endoplasmic reticulum, plasma membrane	34.64	41.73
Bra037084.1-P	Field mustard	extracellular	34.64	40.61
GSMUA_Achr4P29020_001	Banana	plastid	27.12	39.71
Bra038089.1-P	Field mustard	extracellular	33.01	39.45
Bra039563.1-P	Field mustard	plasma membrane	33.01	34.71
Bra023850.1-P	Field mustard	extracellular	25.16	33.48
Bra031329.1-P	Field mustard	extracellular	36.27	32.65

Protein Annotations

EnsemblPlants:Bra027040.1	EnsemblPlants:Bra027040.1-P	EnsemblPlantsGene:Bra027040	Gene3D:1.10.110.10	InterPro:Bifun_inhib/LTP/seed_sf	InterPro:Hydrophob_seed
PANTHER:PTHR31731	PANTHER:PTHR31731:SF25	PFAM:PF14547	PFscan:PS51257	SEG:seg	SignalP:SignalP-noTM
SUPFAM:SSF47699	UniParc:UPI0002542566	UniProt:M4EE29	MapMan:35.2	:	:

Description

AT1G62500 (E=2e-043) | protease inhibitor/seed storage/lipid transfer protein (LTP) family protein

Coordinates

chrA09:-:7838287..7839207

Molecular Weight (calculated)

29816.7 Da

IEP (calculated)

8.887

GRAVY (calculated)

0.027

Length

306 amino acids

Sequence
(BLAST)

001: MGSRVSASFF IFLIATVITL PPTIQACTPC THPHPPVPKP PHQGGGGGGG GGGGGGGGGG GGGGGGGGGG GGNPPHHGGK GGSKPPHHGG KGGGPPHHGG
101: GGGGPPHHGG GTSPPFVRPP PVVYPPPVVR PPPISRPPPV VYPPPMVRPP PVTTPPGILP PIINPPPVTT PPGILPPITT PPGLLPPIIN PPPITTPPPS
201: SGYPPYHGGP PSGGGSSQPT CPINALKLGA CVDVLGGLIH IGLGNPVENV CCPVLQGLLE LEAAVCLCTT IRLKLLNLNI FIPLALQALI TCGINPPPGF
301: ICPPLT

Best Arabidopsis Sequence Match ( AT1G62500.1 )
(BLAST)

001: MGSRVLASFF VFLIFTVITL PPTIQACTPC TRPHPPVPKP PQHGGGGGGG SKPPPHHGGK GGGKPPPHGG KGGGPPHHGG GGGGGGKSPP VVRPPPVVVR
101: PPPIIRPPPV VYPPPIVRPP PITRPPIIIP PIQPPPVTTP PGLLPPITTP PGLLPPVTTP PGLLPPVTTP PGLLPPIINP PPVTVPPPSS GYPPYGPPSG
201: GGGGGGGKQP TCPINALKLG ACVDVLGGLI HIGLGNPVEN VCCPVLQGLL ELEAAVCLCT TIRLKLLNLN IFIPLALQAL ITCGINPPSG FVCPPLT

Arabidopsis Description

Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9SXE7]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.