Factsheet for Bra029518.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 3
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY16646	Canola	plastid	96.05	89.13
AT4G04790.1	Thale cress	cytosol, mitochondrion	78.82	72.96
Bra013567.1-P	Field mustard	cytosol, mitochondrion	53.55	52.25
VIT_19s0014g05230.t01	Wine grape	cytosol	34.61	44.8
KRG88500	Soybean	cytosol	5.39	44.09
KRH25865	Soybean	cytosol	8.42	43.54
PGSC0003DMT400049471	Potato	cytosol	24.08	42.46
GSMUA_Achr1P26200_001	Banana	extracellular	19.08	40.85
KRH55647	Soybean	cytosol	24.87	40.73
KRH22239	Soybean	cytosol	24.21	39.15
Solyc07g064110.2.1	Tomato	plastid	41.71	37.29
KRH27097	Soybean	cytosol, mitochondrion	35.53	35.76
KRH25868	Soybean	cytosol, nucleus, plastid	13.03	35.61
Os02t0132600-02	Rice	cytosol	25.26	35.56
TraesCS6A01G096500.1	Wheat	cytosol, mitochondrion	34.87	30.74
TraesCS6D01G087600.1	Wheat	cytosol, plastid	34.74	30.63
TraesCS6B01G124900.1	Wheat	cytosol, plastid	35.0	30.54
HORVU6Hr1G017720.35	Barley	plastid	34.74	29.73
OQU84311	Sorghum	mitochondrion	35.53	27.58
Zm00001d015156_P001	Maize	plastid	34.74	27.56
GSMUA_Achr1P26220_001	Banana	plastid	15.39	27.46
KRG88502	Soybean	vacuole	12.89	25.99
KRH55650	Soybean	mitochondrion, plastid	12.63	24.81

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	EnsemblPlantsGene:Bra029518	EnsemblPlants:Bra029518.1	EnsemblPlants:Bra029518.1-P	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:IPR002885	InterPro:IPR011990	UniProt:M4EL51	PFAM:PF01535
PFAM:PF13041	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF623	InterPro:Pentatricopeptide_repeat	TIGRFAMs:TIGR00756
InterPro:TPR-like_helical_dom_sf	UniParc:UPI000254268F	SEG:seg	:	:	:

Description

AT4G04790 (E=0.0) | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G21880.1); Has 8701 Blast hits to 4047 proteins in 142 species: Archae - 4; Bacteria - 18; Metazoa - 161; Fungi - 114; Plants - 8118; Viruses - 0; Other Eukaryotes - 286 (source: NCBI BLink).

Coordinates

chrA09:+:17409558..17413269

Molecular Weight (calculated)

86387.0 Da

IEP (calculated)

6.196

GRAVY (calculated)

-0.221

Length

760 amino acids

Sequence
(BLAST)

001: MVVSKANKLS SVFISRIKYS AQSSIPSAAT VKNRDIPGTS QAVKDLLRSK ISSSGTVSSL EKTDDNILKI PSFNAKIPID ISFRSKELSR ERKERRVYKK
101: NALSRRFAKI FRDSAHKLGT DATFGAFDRV AKEMSVTEYN AMVGVYFELA EKSHDLEYAL DHIGKAFEVL KTMRDRGFQI EESVYGPVLE YLIDMDMVDE
201: FRGFKDVISE ASPGLVERLG YYEMLLWIQL GDGEKVEELC GDIDGNGDCL TLLQESYLLA LCKKEQKDHL QRLFEIIDIT KVRSSDLLAN IFGYLSKFSL
301: ESFARKFLWE LRESDEGVKN VSDLISIYST CTPNLTVEDT ILKFNKMHEE LNVMPSSTSY EKLVKYSCDS NEVVTALDVV EKMGEAGVTI TADILHSLLH
401: AIDEVLEFNL VRRIHSIMCT NSVKPSSENF RSMIRLCTRI RDFEGAYNML GNLKNFNLEP NSSMFNCILA GYFREKNVCS ALMVVKQMKE AGVKPDSITY
501: GYLINNCNRE DTITKYYNEM KQAGVQATKR IYKSLIDAYA ASGQFEKAKQ VLLDPDVPAR YQNELKSELI SALASHGKRA DALILYEEMK ETKCQVDPKS
601: IISLIEYCDS NGDLNTLVQL ADDLQDDHSW IDGFFRMILF SVRNRKSSNV LDLLKRNEVR LSKKDIHVEY HFDEVFWAIA ETEPTDVKLG MDLLRYIKEE
701: LGFVPSRKSL DFLLHACVNA KDMKNGLLVW KEYQSAALPC NVLSFLRQAS LVLLLANMHV

Best Arabidopsis Sequence Match ( AT4G04790.1 )
(BLAST)

001: MVVSKVNKSL LSSVFKSRIR PTGESSIASG NKDIAGTSQA VKDLLSSKNS SSDLEEASLQ DRVSKLLHVT TSDKSSLEKN LFLKIPSFTT KIPYDISLRT
101: KELSRERKER RVYKQNGLSR RFAKIFRDSA QKLGTEAMFG AFDRVAKEMS VTEYNAMIGV YLEHAEKSND LDYALGHIEK AFELLKSMRD RGFLIEERVY
201: GPLLGYLIGM DMVDEFHSFK DVIREASPGS VERLGYYEML LWIHLGDGEK IEELCSTIDG DNGESLSVLQ ENYLLALCKK DQKYHLERLL EIVDITKVRS
301: SDLLANIFEY LGRFSLDSVA SRFLWELRES DEGVKNVSDL ISIYSTCTPN PTVEDTILKF NKMHEELDVM PSSTSYEKLV KYSCDSNEVV TALDVVEKMG
401: EAGLMISADI LHSLLHAIDE VLEFDLVRRI HSIMCTKSVK PNTENFRSII RLCTRIKDFE GAYNMLGNLK NFNLEPNSSM FNCILAGYFR EKNVSSALMV
501: VKQMKEAGVK PDSITFGYLI NNCTQEDAIT KYYEEMKQAG VQATKRIYMS LIDAYAASGK FEKAKQVLVD PDVPAINQNE LKSVLISALA SRGKWADALH
601: IYEEMRKAEC HVDPKSIISL IEYSDSKGEL STLVQLADDL QDDTSWIDGF FRMILFAVRN KKSSDIVDLL KRNKVRLLKK GIPVEAHFDE VFWAIAETEP
701: SKVHLGMDLL RFMKDELGFV PSRKCLDFLL HACVNAKDLE HGLLVWKEYQ SAAFPCNVLS FLRMYQVLLA AGDSEGAKAL VSKIPKDDKD VQHIIEESQS
801: AFSQAPNKKK PKKKMIVLST K

Arabidopsis Description

Pentatricopeptide repeat-containing protein At4g04790, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q6NQ81]
SUBAcon: [cytosol,mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.