Factsheet for Bra033600.1-P

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

plasma membrane 5
extracellular 5
endoplasmic reticulum 7
golgi 5
vacuole 5
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	nucleus, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	endoplasmic reticulum

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY56766	Canola	nucleus	84.29	49.07
CDX72715	Canola	nucleus	71.47	42.97
Bra010701.1-P	Field mustard	nucleus	66.67	35.25
AT4G39160.2	Thale cress	nucleus	54.49	27.24
GSMUA_Achr2P23110_001	Banana	nucleus	11.86	25.87
HORVU6Hr1G080290.6	Barley	nucleus	21.15	25.0
TraesCS6D01G309500.4	Wheat	nucleus	20.51	24.06
TraesCS6B01G361300.1	Wheat	nucleus	20.19	23.68
KRH34776	Soybean	nucleus	23.72	14.86
PGSC0003DMT400045728	Potato	nucleus	33.97	14.85
KRG92007	Soybean	nucleus	23.72	14.26
Solyc02g081640.2.1	Tomato	nucleus	31.41	13.9
TraesCS6A01G330400.1	Wheat	nucleus, plastid	18.91	11.73
Zm00001d017507_P001	Maize	nucleus	17.63	10.36
KXG24287	Sorghum	nucleus	25.64	10.26
OQU75762	Sorghum	nucleus	25.64	9.91
Zm00001d035113_P001	Maize	nucleus	26.6	9.9
KRH77688	Soybean	nucleus	28.21	9.41
VIT_03s0038g04460.t01	Wine grape	nucleus	31.09	9.21
KRH27726	Soybean	nucleus	27.56	9.07
TraesCS1D01G314900.1	Wheat	nucleus	20.83	8.25
TraesCS1A01G314400.2	Wheat	nucleus	20.83	8.25
HORVU1Hr1G067100.2	Barley	nucleus	20.51	8.13
TraesCS1B01G326700.2	Wheat	nucleus	19.87	7.87
Zm00001d017505_P003	Maize	plastid	26.92	7.39
Os03t0840500-00	Rice	cytosol, nucleus	3.85	2.81

Protein Annotations

MapMan:15.4.3.2	MapMan:15.5.2.2	EnsemblPlantsGene:Bra033600	EnsemblPlants:Bra033600.1	EnsemblPlants:Bra033600.1-P	GO:GO:0000126
GO:GO:0001026	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006359	GO:GO:0006383
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:Homeobox-like_sf	UniProt:M4EXR3
PFAM:PF15963	PANTHER:PTHR22929	InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689	InterPro:TFIIIB_B''
TMHMM:TMhelix	UniParc:UPI000253F8E5	SEG:seg	:	:	:

Description

AT4G39160 (E=4e-076) | DNA binding / transcription factor

Coordinates

chrA06:-:26046774..26048782

Molecular Weight (calculated)

35759.2 Da

IEP (calculated)

4.026

GRAVY (calculated)

-0.881

Length

312 amino acids

Sequence
(BLAST)

001: MQTEVCMNTL FFYAGVSLLL LFKFKTVFSI LLQEEECHWN METLNIVQEE GITTAYVEKE LLETPDDEIK FLPIKDMLRL VEYREWLEKK EAKGAPVVPP
101: AQESNTNASE DNHYYSQGFD EEDEFGMVET ENQEINVVKP DSPVNYQTYM KKTPRTRWSK QDTELFYEGI QDFGGDLSMV QLLFSDRTHQ QIKLKFKLEE
201: RRNPLKLNDA LSTRPKDLTR FHTLIKKLQQ EAPAERAGEE EGEAGEAGEE AETTTDVPEN EEPAKSEETG DGVAGVKEPD GGDIENNGGD ECEDNEGDDD
301: DDEFWNSYKS DM

Best Arabidopsis Sequence Match ( AT4G39160.3 )
(BLAST)

001: MDLDFDDQPS DHAAPAVRAG ARFKPKGRPQ PKKKQVSLST TQTTLSPDVA QEKLSTQSED LVPLDGSSEI PSNALPSETN VPDSGSINKS TIGTLSEENE
101: DAFPRGVHWS VKPSILRACN NVNLVGNRRD DGIEATTSFP DDPRTQDSAI FGDYVTPETG ADEGRVDMET LDIVQEEGTT SSYVQHTGKL QPKPRLLETV
201: VEEPEPHYSA GDTGYFPMGT NESEFMANVE SRNGFSTYED LQEEELNIPE APRETVGEME AQNASGGWEQ EEQGVSPCIN NTVTGEEENC MGNTVEEQSK
301: RESKTGKSKR ATSRKRKKTS EEPNKSSEKT EQKKFKHSSR RQKRTLEKEL LETPDHEIRS LPLRDMLRLV EYKEWMQKKE AKGAGVQPSQ ESNNMNGSGS
401: QYHSQGFDEE DEFGDFGIES SEYQENNVVK PDSPVNYQTY MNKTSRTRWS KEDTELFYEG IQEFGSNLSM IQQLFPERTR EQMKLKFKLE ERRNPLKLND
501: ALSSRSKHFT HFKNVIKKLQ QEAAAAKEGE EEEEAGAEAE TTDVPENEEP EKSEETERAS DGVAAGVKES DGGDVENGVR SDGGDECDDD EDFWNSYKSD
601: M

Arabidopsis Description

Homeodomain-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4JVA4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.