Factsheet for Bra037196.1-P

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, plasma membrane

Predictor Summary:

plasma membrane 6
extracellular 5
endoplasmic reticulum 6
golgi 5
vacuole 5
nucleus 1
peroxisome 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, plasma membrane
Any Predictor:	nucleus, peroxisome, plastid, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
PTS1:	peroxisome
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX81428	Canola	endoplasmic reticulum, plasma membrane	93.7	92.97
AT2G10940.2	Thale cress	endoplasmic reticulum, plasma membrane	74.8	65.29
Solyc07g007860.1.1	Tomato	extracellular	33.07	60.87
PGSC0003DMT400079355	Potato	extracellular	32.28	59.85
KRH03647	Soybean	endoplasmic reticulum, extracellular, plasma membrane	40.16	53.68
KRH20158	Soybean	endoplasmic reticulum	44.88	50.22
VIT_11s0016g05840.t01	Wine grape	endoplasmic reticulum, plasma membrane	46.85	44.74
Zm00001d002094_P001	Maize	extracellular, plastid	33.07	41.38
Os04t0644400-01	Rice	nucleus	27.17	37.91
Zm00001d026436_P001	Maize	endoplasmic reticulum, plasma membrane, vacuole	30.32	37.75
EES12957	Sorghum	endoplasmic reticulum, plasma membrane, vacuole	31.89	37.33
Bra001852.1-P	Field mustard	extracellular	37.8	36.78
Bra037084.1-P	Field mustard	extracellular	37.01	36.02
Bra038089.1-P	Field mustard	extracellular	35.83	35.55
Bra027040.1-P	Field mustard	extracellular	41.73	34.64
Bra039563.1-P	Field mustard	plasma membrane	37.01	32.3
Bra023850.1-P	Field mustard	extracellular	28.74	31.74
TraesCS2B01G546700.1	Wheat	endoplasmic reticulum, extracellular, plasma membrane	34.65	31.43
TraesCS2D01G519700.1	Wheat	endoplasmic reticulum, extracellular, plasma membrane	35.43	31.14
TraesCS2A01G518100.1	Wheat	endoplasmic reticulum, extracellular, plasma membrane	35.04	30.48
Bra031329.1-P	Field mustard	extracellular	39.76	29.71
HORVU2Hr1G114680.2	Barley	endoplasmic reticulum	35.04	21.24

Protein Annotations

Gene3D:1.10.110.10	MapMan:35.2	InterPro:Bifun_inhib/LTP/seed_sf	InterPro:Bifunc_inhib/LTP/seed_store	EnsemblPlantsGene:Bra037196	EnsemblPlants:Bra037196.1
EnsemblPlants:Bra037196.1-P	GO:GO:0005575	GO:GO:0005576	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0009506	GO:GO:0009507	GO:GO:0009535	GO:GO:0009536	GO:GO:0009579	GO:GO:0016020
GO:GO:0048046	InterPro:Hydrophob_seed	UniProt:M4F7Y5	PFAM:PF14547	PANTHER:PTHR31731	PANTHER:PTHR31731:SF54
SMART:SM00499	SUPFAM:SSF47699	SignalP:SignalP-noTM	TMHMM:TMhelix	UniParc:UPI0002541C2B	SEG:seg

Description

AT2G10940 (E=2e-033) | protease inhibitor/seed storage/lipid transfer protein (LTP) family protein

Coordinates

chrA09:+:4025935..4026699

Molecular Weight (calculated)

25875.0 Da

IEP (calculated)

9.489

GRAVY (calculated)

0.358

Length

254 amino acids

Sequence
(BLAST)

001: MESSKLSSLS LCFILICIIF FPQQSFSCGS CNHRKGGKPS IKPPVTVPKL PVPPVTVPKL PVPPVTVPKL PVRPVTVPKL PVPPVTVPKL PVPPVTVPEL
101: PLPPVGGLPI PPGGGLPIPP VGGLPTLPLP PLPIVGPLLP PGTNPPTPGG KDCPPPPGSH KPPSGTGKAT CPIDTLKLGA CVDLLGGLVK IGLGDPAANK
201: CCPLLKGLVE VEAAACLCTT LKLKALNLKL YVPVALQLLL TCGKNPPPGY TCSI

Best Arabidopsis Sequence Match ( AT2G10940.2 )
(BLAST)

001: MDSSKLSSLS LCLFLICIIY LPQHSLACGS CNPRKGGKHS PKAPKLPVPP VTVPKLPVPP VTVPKLPVPP VTVPKLPVPP VTIPKLPVPP VTVPKLPVPP
101: VTVPKLPVPP VTVPKLPVPP VTVPKLPVPP VTVPKLPVPP VTVPKLPLPP ISGLPIPPVV GPNLPLPPLP IVGPILPPGT TPPATGGKDC PPPPGSVKPP
201: SGGGKATCPI DTLKLGACVD LLGGLVKIGL GDPAVNKCCP LLKGLVEVEA AACLCTTLKL KALDLNLYVP VALQLLLTCG KNPPPGYTCS I

Arabidopsis Description

At2g10940/F15K19.1 [Source:UniProtKB/TrEMBL;Acc:Q9SKI0]
SUBAcon: [endoplasmic reticulum,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.