Factsheet for Bra039807.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra007015.1-P	Field mustard	cytosol, plasma membrane	98.14	20.95
HORVU2Hr1G100460.1	Barley	extracellular	2.33	3.29
Bra005661.1-P	Field mustard	plasma membrane	5.58	1.51
Bra027053.1-P	Field mustard	plasma membrane	3.26	0.88
Bra015533.1-P	Field mustard	plasma membrane	3.72	0.84
Bra013158.1-P	Field mustard	plasma membrane	1.86	0.81
Bra037197.1-P	Field mustard	plasma membrane	1.86	0.8
Bra027054.1-P	Field mustard	plasma membrane	3.26	0.77
Bra037952.1-P	Field mustard	plasma membrane	2.79	0.64
Bra000592.1-P	Field mustard	plasma membrane	2.33	0.61
Bra005660.1-P	Field mustard	plasma membrane	1.86	0.51
Bra008427.1-P	Field mustard	cytosol	2.79	0.41
Bra002607.1-P	Field mustard	plastid	0.0	0.0
Bra037331.1-P	Field mustard	plastid	0.0	0.0
Zm00001d020118_P001	Maize	plasma membrane, plastid	0.0	0.0

Protein Annotations

MapMan:22.8.1.5	Gene3D:3.40.50.300	EnsemblPlantsGene:Bra039807	EnsemblPlants:Bra039807.1	EnsemblPlants:Bra039807.1-P	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0016787
UniProt:M4FFD4	InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449	PFscan:PS51419	PANTHER:PTHR24073
PANTHER:PTHR24073:SF642	SMART:SM00173	SMART:SM00174	SMART:SM00175	SMART:SM00176	SMART:SM00177
SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231	UniParc:UPI000254527C	SEG:seg

Description

AT3G53610 (E=2e-097) ATRAB8 | ATRAB8; GTP binding

Coordinates

chrA04:+:3754773..3756319

Molecular Weight (calculated)

23835.3 Da

IEP (calculated)

8.441

GRAVY (calculated)

-0.365

Length

215 amino acids

Sequence
(BLAST)

001: MAAPPARARA DYDYLIKLLL IGDSGVGKSC LLLRFSDGSF TTSFITTIGI DFKIRTIELD GKRIKLQIWD TAGQERFRTI TTAYYRGAMG ILLVYDVTDE
101: SSFNNIRNWI RNIEQHASDN VNKILVGNKA DMDESKRAVP KAKGQALADE YGMKFFETSA KTNLNVEEVF FSIGKDIKQR LADTDAKAEP QTIKINQNDQ
201: GAGTSQATQK SACCG

Best Arabidopsis Sequence Match ( AT3G53610.1 )
(BLAST)

001: MAAPPARARA DYDYLIKLLL IGDSGVGKSC LLLRFSDGSF TTSFITTIGI DFKIRTIELD GKRIKLQIWD TAGQERFRTI TTAYYRGAMG ILLVYDVTDE
101: SSFNNIRNWI RNIEQHASDS VNKILVGNKA DMDESKRAVP KSKGQALADE YGMKFFETSA KTNLNVEEVF FSIAKDIKQR LADTDARAEP QTIKINQSDQ
201: GAGTSQATQK SACCGT

Arabidopsis Description

RABE1ARas-related protein RABE1a [Source:UniProtKB/Swiss-Prot;Acc:O24466]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.