Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX75625 | Canola | nucleus | 80.85 | 86.47 |
| AT4G36980.4 | Thale cress | nucleus | 72.14 | 75.9 |
| KRH77000 | Soybean | nucleus | 58.8 | 63.24 |
| VIT_07s0031g00640.t01 | Wine grape | nucleus | 59.49 | 63.04 |
| KRH28473 | Soybean | nucleus | 58.29 | 62.23 |
| GSMUA_Achr6P10170_001 | Banana | nucleus | 56.24 | 61.15 |
| Os03t0395900-02 | Rice | nucleus | 54.87 | 60.45 |
| PGSC0003DMT400010353 | Potato | nucleus | 57.09 | 59.54 |
| Solyc02g090850.2.1 | Tomato | nucleus | 56.92 | 59.36 |
| TraesCS4D01G149700.1 | Wheat | nucleus | 52.31 | 57.74 |
| GSMUA_Achr10P... | Banana | nucleus | 49.06 | 57.52 |
| HORVU4Hr1G039020.13 | Barley | nucleus | 51.28 | 56.82 |
| TraesCS4A01G149000.1 | Wheat | nucleus | 51.45 | 56.69 |
| TraesCS4B01G164500.1 | Wheat | nucleus | 51.97 | 55.17 |
| Zm00001d029426_P024 | Maize | nucleus | 53.33 | 52.97 |
| OQU92461 | Sorghum | nucleus | 54.36 | 49.38 |
Protein Annotations
| EnsemblPlants:CDX69275 | EnsemblPlantsGene:GSBRNA2T00131095001 | GO:A0A078BWU0 | InterPro:SWAP_N_domain | ncoils:Coil | PANTHER:PTHR13161 |
| PANTHER:PTHR13161:SF4 | PFAM:PF09750 | ProteinID:CDX69275 | ProteinID:CDX69275.1 | SEG:seg | SMART:SM01141 |
| TMHMM:TMhelix | UniParc:UPI0004EE6BE4 | MapMan:35.2 | : | : | : |
Description
BnaC01g01780D
Coordinates
chrLK031789:+:3841647..3846084
Molecular Weight (calculated)
66476.2 Da
IEP (calculated)
9.622
GRAVY (calculated)
-1.001
Length
585 amino acids
Sequence
(BLAST)
(BLAST)
001: MWHEARRSEK KVHDMMDAAR KRAQRRAIFL AKRRGDPIQS IQAVGSRYKI FRDDGLYQAT EDQQGLIPWN GKQDVMIDRF DGRAMLDFVR EAGSRSMRPH
101: KKSEEEEEVE EFVNFERYRD LIKHRRRGFS DGEGLLHVHQ ELEAKLAAPF LGTRPQQGQP PANKGTYSQV GFSYGGNGKE ASLDAGEDDE EEEEDDEDEE
201: EDFDSNDSED EGMEAIAKQF GVKRYGWLVY MDKKAKEEEK RQKELIKGDP SVKKLSRKER RKVSRIERDR ERETSRSFGR HMIQHDPYRE SRRSPTYEAY
301: PRSRRSRSRS YSPSYSRRNG HGDDSGEISK PKIEYITEFG GSGDVGSPKF GGYSPPRSPP SQTDLFTRPS SGHILEALHV DPASGVSLEK DKIVKLPKPS
401: VSTSSALAKL SKAGTSLGGS SKQKPAEKKE TPQERLKRIM NKQLTQQIKK DTATETAKKR EQEKQRLEKV AETSRLSRKG TDEAGVEAEA GAGDPADMVR
501: DHCLGPRLGH HHALLNARAD ALPRIQGLRG VEAGQGTELK KQRDKEGTLI VEAKRLYVAS FPIFLCVMYV FFWSFFLLLL ILNKV
101: KKSEEEEEVE EFVNFERYRD LIKHRRRGFS DGEGLLHVHQ ELEAKLAAPF LGTRPQQGQP PANKGTYSQV GFSYGGNGKE ASLDAGEDDE EEEEDDEDEE
201: EDFDSNDSED EGMEAIAKQF GVKRYGWLVY MDKKAKEEEK RQKELIKGDP SVKKLSRKER RKVSRIERDR ERETSRSFGR HMIQHDPYRE SRRSPTYEAY
301: PRSRRSRSRS YSPSYSRRNG HGDDSGEISK PKIEYITEFG GSGDVGSPKF GGYSPPRSPP SQTDLFTRPS SGHILEALHV DPASGVSLEK DKIVKLPKPS
401: VSTSSALAKL SKAGTSLGGS SKQKPAEKKE TPQERLKRIM NKQLTQQIKK DTATETAKKR EQEKQRLEKV AETSRLSRKG TDEAGVEAEA GAGDPADMVR
501: DHCLGPRLGH HHALLNARAD ALPRIQGLRG VEAGQGTELK KQRDKEGTLI VEAKRLYVAS FPIFLCVMYV FFWSFFLLLL ILNKV
001: MWHEARRSEK KVHDMMDAAR KRAQRRAIYL AKRRGDPIQS IQAVGSRYRV FRDDGLYQAT EDQQGLIPWN GKQDVMIDRF DGRALLDFVR EAGSRSVRPH
101: KKTEEEEELE EFVNFERYRD LIKHRRRGFS DEEGLQHVHQ ELEAKLAAPF LGTRTQPAQP PANKGTYSQV GFSYAGNGKD NSLDADEDDV DDDEDDEDEE
201: EEFDSNDSDD EGMETIAKQF GIKRYGWLVY MDKKAKEEEK RQKELIKGDP SIKKLSRKER RKVSRIERDR ERETSRSVGR QIIHHDPYRE SRRSPTYEAY
301: PRSRRSRSRS RSYSPSYSRR NGRGDHSDEI SKPKIEYITE FGGGSGDMRS PKFEGYSPPR SPPSQSDLLS RPSPGRILEA LHVDPASDIS LEKDKVAKPA
401: KSTVSTSTAL AKLSKVAGTS SSKQSQAEKK ETPQERLKRI MNKQLTKQIK KDSATETAKK REQERQRLEK LAETSRLSRN RQRSRSRSIS RSPPPRRHRR
501: SRSRSGSRSR RSRRHSSRSR SRSPSRSLSR SPKRSRRRSP SYSRSPRRRS SRSRH
101: KKTEEEEELE EFVNFERYRD LIKHRRRGFS DEEGLQHVHQ ELEAKLAAPF LGTRTQPAQP PANKGTYSQV GFSYAGNGKD NSLDADEDDV DDDEDDEDEE
201: EEFDSNDSDD EGMETIAKQF GIKRYGWLVY MDKKAKEEEK RQKELIKGDP SIKKLSRKER RKVSRIERDR ERETSRSVGR QIIHHDPYRE SRRSPTYEAY
301: PRSRRSRSRS RSYSPSYSRR NGRGDHSDEI SKPKIEYITE FGGGSGDMRS PKFEGYSPPR SPPSQSDLLS RPSPGRILEA LHVDPASDIS LEKDKVAKPA
401: KSTVSTSTAL AKLSKVAGTS SSKQSQAEKK ETPQERLKRI MNKQLTKQIK KDSATETAKK REQERQRLEK LAETSRLSRN RQRSRSRSIS RSPPPRRHRR
501: SRSRSGSRSR RSRRHSSRSR SRSPSRSLSR SPKRSRRRSP SYSRSPRRRS SRSRH
Arabidopsis Description
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Splicing factor, suppressor of white apricot (InterPro:IPR019147); /.../72 Blast hits to 5479 proteins in 321 species: Archae - 0; Bacteria - 89; Metazoa - 5155; Fungi - 712; Plants - 341; Viruses - 39; Other Eukaryotes - 1336 (source: NCBI BLink). [Source:TAIR;Acc:AT4G36980]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.