CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY56766	Canola	nucleus	81.31	78.73
Bra033600.1-P	Field mustard	endoplasmic reticulum	42.97	71.47
CDY12124	Canola	nucleus	62.62	55.18
CDX90315	Canola	nucleus	60.12	52.7
CDY16866	Canola	vacuole	48.17	45.96
CDX87111	Canola	nucleus	47.4	45.56
AT4G39160.2	Thale cress	nucleus	49.9	41.51
GSMUA_Achr2P23110_001	Banana	nucleus	7.13	25.87
HORVU6Hr1G080290.6	Barley	nucleus	11.37	22.35
TraesCS6D01G309500.4	Wheat	nucleus	10.98	21.43
TraesCS6B01G361300.1	Wheat	nucleus	10.98	21.43
PGSC0003DMT400045728	Potato	nucleus	25.43	18.49
Solyc02g081640.2.1	Tomato	nucleus	23.31	17.16
KRH34776	Soybean	nucleus	16.18	16.87
TraesCS6A01G330400.1	Wheat	nucleus, plastid	15.99	16.5
KXG24287	Sorghum	nucleus	22.16	14.74
KRG92007	Soybean	nucleus	13.87	13.87
TraesCS1A01G314400.2	Wheat	nucleus	18.88	12.44
TraesCS1D01G314900.1	Wheat	nucleus	18.88	12.44
Zm00001d035113_P001	Maize	nucleus	19.85	12.29
HORVU1Hr1G067100.2	Barley	nucleus	18.3	12.07
TraesCS1B01G326700.2	Wheat	nucleus	18.3	12.06
OQU75762	Sorghum	nucleus	18.5	11.9
Zm00001d017507_P001	Maize	nucleus	11.95	11.68
KRH77688	Soybean	nucleus	20.62	11.44
VIT_03s0038g04460.t01	Wine grape	nucleus	22.35	11.02
KRH27726	Soybean	nucleus	19.85	10.87
Os03t0840500-00	Rice	cytosol, nucleus	8.29	10.07
Zm00001d017505_P003	Maize	plastid	19.65	8.98

Protein Annotations

MapMan:15.4.3.2	MapMan:15.5.2.2	GO:A0A078C7E6	EnsemblPlants:CDX72715	ProteinID:CDX72715	ProteinID:CDX72715.1
GO:GO:0000126	GO:GO:0001026	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006383
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00100309001	InterPro:Homeobox-like_sf
PFAM:PF15963	PANTHER:PTHR22929	InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689	InterPro:TFIIIB_B''
UniParc:UPI0004EE6C79	SEG:seg	:	:	:	:

Description

BnaC07g47370D

Coordinates

chrLK031796:-:2784944..2787660

Molecular Weight (calculated)

58018.9 Da

IEP (calculated)

4.482

GRAVY (calculated)

-0.956

Length

519 amino acids

Sequence
(BLAST)

001: MDLDFDDQPA APAGIARAGA KFIPKGRPQP KKKQLSLSTS QPTTLSTLLP SEMLSATQSQ DPVSLDDVST IVPDSGLIDQ STVGTISKEN VFSEGLSVLR
101: PCSNVNSERK KCDNGTEAAP ANPPDDPKSL DSATFGDFVT QSMQTGEEEC HWNMETLNII QEEGITAAYE QHSGKIQPKP RLQDAVIEEP ESHYSVDYPT
201: AANQSKVMVT VTNTVPGGEE HEDHVIGEEG NGLGTTVEEE ATRSGRESKK GKSKRDRKQK TTIVGKETEH WRRNCLKLRM MKSNFCPLKI CFCLVEYREW
301: MEKKEAKGAP VVPPTQESNT NASEDNHYYS QGFDAEDEFG MVETENQENN VVKPDSPVNY QTYMKKTPRT RWSKQDTELF YERIQEFGGN LSMVQQLFPD
401: RTCQQIKLKF KLEERRNPLK LNDALSTRSK HITHFHTLIK KLLQQEAAAE REAGDGEEAE TTTDVPENEE PAKSEETGDG VAGVKEQDGG DIENNGRDEC
501: EDNEGDDDDE FWNSYKSDM

Best Arabidopsis Sequence Match ( AT4G39160.3 )
(BLAST)

001: MDLDFDDQPS DHAAPAVRAG ARFKPKGRPQ PKKKQVSLST TQTTLSPDVA QEKLSTQSED LVPLDGSSEI PSNALPSETN VPDSGSINKS TIGTLSEENE
101: DAFPRGVHWS VKPSILRACN NVNLVGNRRD DGIEATTSFP DDPRTQDSAI FGDYVTPETG ADEGRVDMET LDIVQEEGTT SSYVQHTGKL QPKPRLLETV
201: VEEPEPHYSA GDTGYFPMGT NESEFMANVE SRNGFSTYED LQEEELNIPE APRETVGEME AQNASGGWEQ EEQGVSPCIN NTVTGEEENC MGNTVEEQSK
301: RESKTGKSKR ATSRKRKKTS EEPNKSSEKT EQKKFKHSSR RQKRTLEKEL LETPDHEIRS LPLRDMLRLV EYKEWMQKKE AKGAGVQPSQ ESNNMNGSGS
401: QYHSQGFDEE DEFGDFGIES SEYQENNVVK PDSPVNYQTY MNKTSRTRWS KEDTELFYEG IQEFGSNLSM IQQLFPERTR EQMKLKFKLE ERRNPLKLND
501: ALSSRSKHFT HFKNVIKKLQ QEAAAAKEGE EEEEAGAEAE TTDVPENEEP EKSEETERAS DGVAAGVKES DGGDVENGVR SDGGDECDDD EDFWNSYKSD
601: M

Arabidopsis Description

Homeodomain-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4JVA4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.