Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra024960.1-P | Field mustard | cytosol, mitochondrion, nucleus | 98.19 | 98.19 |
| CDY33517 | Canola | cytosol, mitochondrion, nucleus | 98.19 | 98.19 |
| CDY28970 | Canola | cytosol | 55.12 | 73.2 |
| CDY40566 | Canola | cytosol, plastid | 62.35 | 73.14 |
| CDY40567 | Canola | mitochondrion | 62.35 | 64.49 |
| CDY28971 | Canola | mitochondrion | 63.86 | 61.99 |
| AT5G47150.1 | Thale cress | cytosol | 56.33 | 57.01 |
| CDY33518 | Canola | nucleus | 40.36 | 36.81 |
| CDX77745 | Canola | nucleus | 40.66 | 35.06 |
| CDY31670 | Canola | nucleus | 31.02 | 14.37 |
| CDX84255 | Canola | nucleus | 30.72 | 14.15 |
| CDY25627 | Canola | nucleus | 31.33 | 13.94 |
| CDX89510 | Canola | nucleus | 31.33 | 13.72 |
| CDX80930 | Canola | nucleus | 26.2 | 13.51 |
| CDY11319 | Canola | nucleus | 25.9 | 13.33 |
| CDX98805 | Canola | nucleus | 26.2 | 13.28 |
| CDY59935 | Canola | nucleus | 26.2 | 13.2 |
| CDX96449 | Canola | nucleus | 25.9 | 13.09 |
| CDX68245 | Canola | nucleus | 26.2 | 13.06 |
| CDY61331 | Canola | nucleus | 26.2 | 13.0 |
| CDY11129 | Canola | nucleus | 26.2 | 13.0 |
| CDX70530 | Canola | nucleus | 23.19 | 12.77 |
| CDX78549 | Canola | nucleus | 23.19 | 12.75 |
| CDY14135 | Canola | nucleus | 26.51 | 12.19 |
| CDY19475 | Canola | nucleus | 19.88 | 11.96 |
| CDY23755 | Canola | nucleus | 22.89 | 11.93 |
| CDX78210 | Canola | nucleus | 22.29 | 11.73 |
| CDX73506 | Canola | nucleus | 22.29 | 11.69 |
| CDY17156 | Canola | nucleus | 19.58 | 11.48 |
| CDY37735 | Canola | nucleus, plastid | 21.69 | 11.3 |
| CDY26218 | Canola | nucleus | 23.49 | 11.17 |
| CDY66122 | Canola | nucleus | 23.19 | 10.78 |
| CDX98804 | Canola | nucleus | 19.28 | 10.44 |
| CDY56214 | Canola | nucleus | 23.49 | 9.84 |
| CDY26221 | Canola | nucleus | 23.49 | 8.72 |
| CDX70182 | Canola | nucleus | 25.9 | 8.5 |
| CDY01852 | Canola | plasma membrane | 24.1 | 4.31 |
| CDY22319 | Canola | nucleus | 6.63 | 3.12 |
| CDX96935 | Canola | nucleus | 6.93 | 2.93 |
| CDY14903 | Canola | nucleus | 5.42 | 2.81 |
| CDX94744 | Canola | nucleus | 5.72 | 2.77 |
| CDY50660 | Canola | nucleus | 2.71 | 2.68 |
| CDY51752 | Canola | nucleus | 2.11 | 2.08 |
| CDY39668 | Canola | nucleus | 8.13 | 1.98 |
| CDY62521 | Canola | nucleus | 7.83 | 1.9 |
| CDY46064 | Canola | nucleus | 2.41 | 1.63 |
| CDY42922 | Canola | plasma membrane, vacuole | 3.31 | 1.33 |
| CDX92067 | Canola | nucleus | 1.81 | 1.27 |
| CDX74192 | Canola | nucleus | 1.2 | 0.86 |
| CDY49341 | Canola | nucleus | 1.2 | 0.72 |
| CDY15508 | Canola | mitochondrion | 0.0 | 0.0 |
| CDY18235 | Canola | mitochondrion | 0.0 | 0.0 |
| CDX74191 | Canola | mitochondrion | 0.0 | 0.0 |
| CDY04931 | Canola | cytosol, extracellular, nucleus | 0.0 | 0.0 |
| CDY53193 | Canola | mitochondrion | 0.0 | 0.0 |
| CDY49340 | Canola | cytosol | 0.0 | 0.0 |
| CDY42923 | Canola | mitochondrion | 0.0 | 0.0 |
| CDX86631 | Canola | cytosol | 0.0 | 0.0 |
| CDY21127 | Canola | cytosol | 0.0 | 0.0 |
| CDX89821 | Canola | cytosol | 0.0 | 0.0 |
| CDX92068 | Canola | mitochondrion | 0.0 | 0.0 |
Protein Annotations
| Gene3D:2.30.280.10 | MapMan:35.1 | GO:A0A078CNY1 | EnsemblPlants:CDX77744 | ProteinID:CDX77744 | ProteinID:CDX77744.1 |
| EnsemblPlantsGene:GSBRNA2T00128770001 | InterPro:IPR003105 | InterPro:IPR036987 | PFAM:PF02182 | PFscan:PS51015 | PANTHER:PTHR22884 |
| PANTHER:PTHR22884:SF458 | InterPro:PUA-like_sf | SMART:SM00466 | InterPro:SRA-YDG_sf | InterPro:SRA_YDG | SUPFAM:SSF88697 |
| UniParc:UPI0004EC511F | : | : | : | : | : |
Description
BnaC07g19980D
Coordinates
chrLK031812:+:1527438..1529247
Molecular Weight (calculated)
37292.2 Da
IEP (calculated)
9.416
GRAVY (calculated)
-0.801
Length
332 amino acids
Sequence
(BLAST)
(BLAST)
001: MDRARKRPIV YAIRDFPPGC GTAPSNVPDK DHFKTPRTSD DVVVENPSPD HSDADSEPSG ASLIEEQKFR TSKHDRGLKQ ESPLRSSYHG RVLGAPKHKG
101: SCSKQEPESQ HSDHVVAAPP TPREKVLEVL RAFKDVYREL DRNKQARRGG DSFDATARID IKAQAFLESE GRHVNTEKRI GQVPGINIGD EFQYKTELRL
201: VGLHFKTMCG IDYMEVGGVK YATCIVASEG YGYNDKFDAG VVIYTGEGGN VISKHENKTE DQKMLKGNLA LANSMKHKTE VRVIRGMERW DGKGKRYVYD
301: GLYLVDKYWL EKGVSGKSMY KFKLCKIPGQ PR
101: SCSKQEPESQ HSDHVVAAPP TPREKVLEVL RAFKDVYREL DRNKQARRGG DSFDATARID IKAQAFLESE GRHVNTEKRI GQVPGINIGD EFQYKTELRL
201: VGLHFKTMCG IDYMEVGGVK YATCIVASEG YGYNDKFDAG VVIYTGEGGN VISKHENKTE DQKMLKGNLA LANSMKHKTE VRVIRGMERW DGKGKRYVYD
301: GLYLVDKYWL EKGVSGKSMY KFKLCKIPGQ PR
001: MSQKRSLVFA IRDFPPGCGT HIDVSSSLNH PAEKAFKHPR TGDVSGENLS FAEAKPEGTC LKRESADQDH IFAAPEHNAK REPAGQDHVV AATTVAYATS
101: SHRQKVEIGN SDCDPTPREK VLEVLSLFKQ VYNQLDRDKK ARRGGDFLDA TSRIDLKTLT VLEKMGKQVN TEKRIGSVPG INIGDVFQYK TELRVVGLHS
201: KPMCGIDYIK LGDDRITTSI VASEGYGYND TYNSGVMVYT GEGGNVINKQ KKTEDQKLVK GNLALATSMR QKSQVRVIRG EERLDRKGKR YVYDGLYMVE
301: EYWVERDVRG KSVYKFKLCR IPGQLPLT
101: SHRQKVEIGN SDCDPTPREK VLEVLSLFKQ VYNQLDRDKK ARRGGDFLDA TSRIDLKTLT VLEKMGKQVN TEKRIGSVPG INIGDVFQYK TELRVVGLHS
201: KPMCGIDYIK LGDDRITTSI VASEGYGYND TYNSGVMVYT GEGGNVINKQ KKTEDQKLVK GNLALATSMR QKSQVRVIRG EERLDRKGKR YVYDGLYMVE
301: EYWVERDVRG KSVYKFKLCR IPGQLPLT
Arabidopsis Description
YDG domain-containing protein At5g47150 [Source:UniProtKB/Swiss-Prot;Acc:Q9FHI0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.