CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
mitochondrion 3
nucleus 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY33518	Canola	nucleus	86.49	91.48
AT5G47160.1	Thale cress	mitochondrion	49.35	45.78
CDY28970	Canola	cytosol	29.09	44.8
CDY40566	Canola	cytosol, plastid	31.95	43.46
CDX77744	Canola	cytosol	35.06	40.66
CDY33517	Canola	cytosol, mitochondrion, nucleus	34.81	40.36
CDY40567	Canola	mitochondrion	32.99	39.56
CDY28971	Canola	mitochondrion	33.51	37.72
CDY31670	Canola	nucleus	30.39	16.32
CDX84255	Canola	nucleus	30.39	16.23
CDY25627	Canola	nucleus	27.53	14.21
CDX89510	Canola	nucleus	27.79	14.12
CDX80930	Canola	nucleus	22.86	13.66
CDY11319	Canola	nucleus	22.86	13.64
CDY59935	Canola	nucleus	23.12	13.51
CDX96449	Canola	nucleus	22.86	13.39
CDX68245	Canola	nucleus	23.12	13.36
CDY11129	Canola	nucleus	23.12	13.3
CDY61331	Canola	nucleus	23.12	13.3
CDY37735	Canola	nucleus, plastid	21.56	13.03
CDY23755	Canola	nucleus	21.56	13.03
CDX98805	Canola	nucleus	21.82	12.82
CDY19475	Canola	nucleus	18.18	12.68
CDX70530	Canola	nucleus	19.48	12.44
CDY17156	Canola	nucleus	18.18	12.37
CDX78549	Canola	nucleus	19.22	12.25
CDX78210	Canola	nucleus	19.22	11.73
CDX73506	Canola	nucleus	19.22	11.69
CDY14135	Canola	nucleus	21.3	11.36
CDY66122	Canola	nucleus	20.78	11.2
CDY26218	Canola	nucleus	20.26	11.17
CDX98804	Canola	nucleus	16.36	10.28
CDY56214	Canola	nucleus	20.0	9.71
CDY26221	Canola	nucleus	20.52	8.83
CDX70182	Canola	nucleus	21.82	8.3
CDY01852	Canola	plasma membrane	19.22	3.99
CDY50660	Canola	nucleus	3.12	3.57
CDY22319	Canola	nucleus	6.49	3.55
CDX94744	Canola	nucleus	5.97	3.36
CDX96935	Canola	nucleus	6.75	3.32
CDY51752	Canola	nucleus	2.86	3.27
CDY14903	Canola	nucleus	5.19	3.12
CDX92067	Canola	nucleus	2.34	1.91
CDY39668	Canola	nucleus	6.23	1.76
CDY62521	Canola	nucleus	5.97	1.68
CDY46064	Canola	nucleus	2.08	1.63
CDY42922	Canola	plasma membrane, vacuole	3.38	1.57
CDX74192	Canola	nucleus	1.82	1.5
CDY49341	Canola	nucleus	2.08	1.44
CDX74191	Canola	mitochondrion	0.0	0.0
CDX89821	Canola	cytosol	0.0	0.0
CDY53193	Canola	mitochondrion	0.0	0.0
CDY49340	Canola	cytosol	0.0	0.0
CDY42923	Canola	mitochondrion	0.0	0.0
CDX86631	Canola	cytosol	0.0	0.0
CDY18235	Canola	mitochondrion	0.0	0.0
CDX92068	Canola	mitochondrion	0.0	0.0
CDY04931	Canola	cytosol, extracellular, nucleus	0.0	0.0
CDY21127	Canola	cytosol	0.0	0.0
CDY15508	Canola	mitochondrion	0.0	0.0

Protein Annotations

Gene3D:2.30.280.10	MapMan:35.1	GO:A0A078CLF8	EnsemblPlants:CDX77745	ProteinID:CDX77745	ProteinID:CDX77745.1
EnsemblPlantsGene:GSBRNA2T00128771001	InterPro:IPR003105	InterPro:IPR036987	PFAM:PF02182	PFscan:PS51015	PANTHER:PTHR22884
PANTHER:PTHR22884:SF458	InterPro:PUA-like_sf	SMART:SM00466	InterPro:SRA-YDG_sf	InterPro:SRA_YDG	SUPFAM:SSF88697
UniParc:UPI0004EDD62D	SEG:seg	:	:	:	:

Description

BnaC07g19990D

Coordinates

chrLK031812:+:1538354..1539511

Molecular Weight (calculated)

43180.7 Da

IEP (calculated)

10.690

GRAVY (calculated)

-0.694

Length

385 amino acids

Sequence
(BLAST)

001: MRSLSDKKKR VSAVRDFPYG CGTRSVQNRR SVNGREVVQA ASETRHEPSG VANRGYHHRP GCPVNEAESI DEIMKKAGFN VPARSVVDRG RSVSSYSKFC
101: GSKVKPLSSE EAFRLSASQS RRRQLSHSHS STSSERKLLL AKAVEKQRSS PENGDAAALR RPMTHKPSQR LGLNQVTKAL TPREQVQKVL RIFKLVFKAL
201: NKDQPGRHYE ARAILMNHGM HVNAEKMIGR VPGIEIGDKF QYKSELNLIG LHFDIRGGID YITKRGGLKL ATSIISSEGN GYTDRFNSDV MIYSGQGGNL
301: TSKDQTVVKD QKLETGNLAL ANCMEAKTPV RVIRGVKDPR GKCYVYDGLY LVEEYWRERG RGGSLVFKFK LRRVPDQDST NLRYH

Best Arabidopsis Sequence Match ( AT5G47160.2 )
(BLAST)

001: MMMTQRISPS NKRRRVSFVR DFPQFSVKDE SDIGGDDVAT IKENLDGKED SNCVGVAYRD HHRPKEESFD SIMKKAGFNV ANGNLGNGKF PPSKRNVPLP
101: CEGKVQPLSV EEGIKLMAYE SQRRRCFGKP LVSTKVVQKH RYSPAKKKLS NATALRVRHS PMKKLSNASR LRANAHRPTQ HKDERRSGVL SVIQRNRLSK
201: DLTPRQKVQE VLRIFTLVFD ELDRNKAARR GGSETAKSRI DYQTWTILRE MGMQVNSQKR IGSVPGIKVG DKIQFKAALS VIGLHFGIMS GIDYMYKGNK
301: EVATSIVSSE GNDYGDRFIN DVMIYCGQGG NMRSKDHKAI KDQKLVGGNL ALANSIKEKT PVRVIRGERR LDNRGKDYVY DGLYRVEKYW EERGPQGNIL
401: FKFKLRRTCQ PYVDF

Arabidopsis Description

YDG domain-containing protein At5g47160 [Source:UniProtKB/Swiss-Prot;Acc:Q9LVU3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.