CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, mitochondrion

Predictor Summary:

plastid 1
mitochondrion 4
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra013567.1-P	Field mustard	cytosol, mitochondrion	91.17	96.79
CDX82873	Canola	cytosol, mitochondrion	91.78	88.56
AT4G21880.1	Thale cress	cytosol	72.55	71.17
CDY16646	Canola	plastid	52.0	52.5
CDX94576	Canola	plastid	52.24	52.36
KRG88500	Soybean	cytosol	5.68	50.54
VIT_19s0014g05230.t01	Wine grape	cytosol	34.1	48.04
KRH55647	Soybean	cytosol	26.0	46.34
PGSC0003DMT400049471	Potato	cytosol	24.06	46.17
GSMUA_Achr1P26200_001	Banana	extracellular	19.71	45.92
KRH25865	Soybean	cytosol	8.1	45.58
KRH25868	Soybean	cytosol, nucleus, plastid	14.51	43.17
KRH22239	Soybean	cytosol	23.7	41.7
Os02t0132600-02	Rice	cytosol	26.0	39.81
Solyc07g064110.2.1	Tomato	plastid	40.15	39.06
KRH27097	Soybean	cytosol, mitochondrion	33.86	37.09
TraesCS6D01G087600.1	Wheat	cytosol, plastid	35.79	34.34
TraesCS6B01G124900.1	Wheat	cytosol, plastid	36.03	34.21
TraesCS6A01G096500.1	Wheat	cytosol, mitochondrion	35.43	33.99
HORVU6Hr1G017720.35	Barley	plastid	35.55	33.11
KRH55650	Soybean	mitochondrion, plastid	13.91	29.72
Zm00001d015156_P001	Maize	plastid	34.34	29.65
OQU84311	Sorghum	mitochondrion	34.82	29.42
KRG88502	Soybean	vacuole	12.94	28.38
GSMUA_Achr1P26220_001	Banana	plastid	14.27	27.7

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	EnsemblPlants:CDX79101	ProteinID:CDX79101	ProteinID:CDX79101.1	ncoils:Coil
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00131644001	InterPro:IPR002885	InterPro:IPR011990
PFAM:PF01535	PFAM:PF13041	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF623	InterPro:Pentatricopeptide_repeat
TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0004EEA8BD	SEG:seg	:	:

Description

BnaA01g11680D

Coordinates

chrLK031816:+:1785843..1790376

Molecular Weight (calculated)

93748.6 Da

IEP (calculated)

5.966

GRAVY (calculated)

-0.347

Length

827 amino acids

Sequence
(BLAST)

001: MGLRKAKHKL SAIFRVAMRN AGRKPPDAAN TAEAVAGEYP EMDFIGQGTE SWGSFPDILS PLKSFVDPSN TVQQGVKPRK RKDDNDFSSK KKTLELSAFL
101: SGKLSPSTKK QHVARGRLQF ETFKKNQSQL MKKLSKGCAR KLGQETTFEV LFKMGKEAGE REYNARIQVC VENARRSNDA EYVLDQVGKA IEYLKEMRQG
201: GFSIKEGTYG PFFRYLVDME MVEEFQIFKE FIREASPESV ERLVYYEMLL WIQVNDEEKI HELCNTVDDG GRISLSTLQE YHLVALCEKD RKEDLQKLLE
301: IVDITKVSSP EVLKSVFEYL GNSLLEAVAM KLLLELRDSG EVETVSNLIF SYASCIPNST VDDAILKFNN LHEELDIVPS SSSYEKLVNH LCGSNEVATA
401: LDVVENMCEE GLEISENILH SLLDAIAQIL EFDLVQRIHS IMSNKCVKPN SETFRRSISL CIRIKDFEGA YNMLGNLKNF NLAPNSSMYN SIMAGYFREK
501: NVNKALMVLK EMKEADVKPD SVTFSYLINY CDQEEAIAEY YKEMKQAGVQ ASKHIYMSLI KAYASCKQFE KAKQVLMDQE IPTKDHNELK SVLIHALASN
601: GNITDALSIY EEMKEAGCHV DPKTIITLID HADSDEELTT LAQLAHELND SKYWIDGLFK IVVFAVRNNK SCSILDLLKE TKNDLSKDDI ALEYWLEEVF
701: RSIAETEPSD VKLGLDLLSF MKEELGLCPS RKCLDFLLHA CVNAKDKQTA LVVWKEYQFA ELPYNVLNYL RQVLVAAGDS KSAKEISSKI PKDDRDVKCI
801: IKESSVVFTP KPKKKTSKKK RLSCQAK

Best Arabidopsis Sequence Match ( AT4G21880.1 )
(BLAST)

001: MALKAKKSLS AIFRFAMRNA AKTAEVEAKA VAGDSLISDT GPVSMSLIPD FLSSLKSPED SSNIGQDFGE PALAGQVSSA LDVKSIGYNL LRERNGEKVF
101: PKNVLETLDL LSRKGCSSQK PKQASRGRML TENYQNKQSE IMEKLAKGCV RKLGTETMFE VLTKMGKEAG EKEYNAMTKL CIQRARRSND AEYALDQIGK
201: AIEHLKEMRQ LGFSIGEGAY GPFFKYLVDM EMVAEFQILK DFIKEACPES CGRLVYYEML LWIQVNDEEK IHKLCNKVDD SGLSLSILQE YYLVALCEKD
301: SKENFQKLLE IVDITTVSSP DALKSIFGYL GKSLLESVAM KLLWELRDCR KDGVETVSNL IFSYATCIPN STVEDAIFKF NKLHEELDIV PSSTSYENLV
401: SYLCGSNEVV TALDIVENMC EAGLVISANI LHSLLQAIEQ ILEFNLVQRI YSIMSNKSVK PNSETFRKSI NLCIRIKDFE GAYNMLGNLK NFNLAPNSSM
501: YNSIMAGYFR EKKVNSALKV LKEMKEADVK PDSVTFSYLI NYCGEEATIA KYYKEMKQAG VEVNKHVYMS LVKAYASCGQ FEKAKQVLMD LEVPAKDHNE
601: LKSVLISALA SNGNITEALS IYEEMKKLRC PVEPKAILSL IENSDSNAEL GTLVELTHEL RDSKFWIDGF FKIIVFAVRN NRSSSILDLL EQTKNHLSKD
701: DVGVEYWFEE VFKSIAETES SDVKVGLDLV SFMKEELELC PSRKCLDFLL HACVNAKDKQ SALLVWEEYQ CAELPYNVIN YLRMYQVLVA AGDSKSAEAI
801: VSKIPNDDKD VKCIIKESRI VFTPKLKKKK KKSKQKGLSL QAK

Arabidopsis Description

Pentatricopeptide repeat-containing protein At4g21880, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:O49711]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.