CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, mitochondrion

Predictor Summary:

plastid 1
mitochondrion 4
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX79101	Canola	cytosol, mitochondrion	88.56	91.78
AT4G21880.1	Thale cress	cytosol	69.31	70.46
CDY16646	Canola	plastid	49.36	51.65
CDX94576	Canola	plastid	49.71	51.64
VIT_19s0014g05230.t01	Wine grape	cytosol	33.49	48.89
KRG88500	Soybean	cytosol	5.25	48.39
PGSC0003DMT400049471	Potato	cytosol	23.34	46.4
KRH55647	Soybean	cytosol	24.62	45.47
GSMUA_Achr1P26200_001	Banana	extracellular	18.67	45.07
KRH25865	Soybean	cytosol	7.7	44.9
KRH25868	Soybean	cytosol, nucleus, plastid	14.0	43.17
KRH22239	Soybean	cytosol	22.4	40.85
Solyc07g064110.2.1	Tomato	plastid	39.09	39.41
Os02t0132600-02	Rice	cytosol	24.74	39.26
KRH27097	Soybean	cytosol, mitochondrion	32.79	37.22
TraesCS6D01G087600.1	Wheat	cytosol, plastid	34.19	33.99
TraesCS6B01G124900.1	Wheat	cytosol, plastid	34.31	33.75
TraesCS6A01G096500.1	Wheat	cytosol, mitochondrion	33.72	33.53
HORVU6Hr1G017720.35	Barley	plastid	33.84	32.66
Zm00001d015156_P001	Maize	plastid	32.91	29.44
OQU84311	Sorghum	mitochondrion	33.61	29.42
KRH55650	Soybean	mitochondrion, plastid	13.07	28.94
KRG88502	Soybean	vacuole	12.49	28.38
GSMUA_Achr1P26220_001	Banana	plastid	14.0	28.17

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	EnsemblPlants:CDX82873	ProteinID:CDX82873	ProteinID:CDX82873.1	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00138234001	InterPro:IPR002885	InterPro:IPR011990	PFAM:PF01535
PFAM:PF13041	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF623	InterPro:Pentatricopeptide_repeat	TIGRFAMs:TIGR00756
InterPro:TPR-like_helical_dom_sf	UniParc:UPI0004EE7C2D	SEG:seg	:	:	:

Description

BnaC01g13230D

Coordinates

chrLK031830:+:989158..993736

Molecular Weight (calculated)

97081.1 Da

IEP (calculated)

6.206

GRAVY (calculated)

-0.276

Length

857 amino acids

Sequence
(BLAST)

001: MGLRKAKHKL SAIFRVAMRN AAKKPPAEAV AGEYPEMDFI GQGTESWSSF PDILTPLKSF MDPSNTGQQG GNTLVMRGTS SLAGLVSSGF GVKPRKRKDD
101: NDFSSKKKTL ELSAFLSGKL PPSTKKQHVA RGRLQFETFK KNQSQLMKKL SKGCARKLGQ ETTFEVLFKM GKEAGEREYN ARIQLCVENA RRSNDAEYVL
201: DQVGKAIEYL KEMRQGGFSI KEGTYGPLFR YLVDMEMVEE FQIFEEFIRE ASPESVERLV YYEMLLWIQV NDEEKIHEIC NTVDDSGRIS LSTLQEYHLV
301: ALCEKDRKED LQKLLEIVDI TKVSSPEVLK SMFEYLGNSL LEAVAMKLLL ELRDSGEVEA VSNLIFSYAS CIPNSSVEDA ILKFNKLHEE LDIVPSSTSY
401: EKLVGYLCGS NEVATALDVV ENMCEAGLEI SENILHSLLD AIGQILEFDL VQRIHSIMSN KCVKPNSETF RRSISLCIRI KDFEGAYNML GNLKNFNLAP
501: NSSMYNSIMV GYFREKNVNK ALMVLKEMKE ADVKADSVTF SYLINYCDQE EAIAEYYKEM KQAGIQASKH IYMSLIKAYA SCKQFEKAKQ VLLDQEVPTK
601: DHNELKSILI HALALNGNIT DALSIYEEMK EAGCHVDPKT IITLIDHADS NEELTTLAQL AHELNDSKYW IDGLFKIVVF AVRNNKSCSI LDLLKGTKND
701: LFKDDIALEY WLEELFRSIA ETEPSDVKLG LDLLSFMKEE LGLCPSRKCL DFLLHACVNA KDKQTALVIW KEYQFAELPY NVLNYLRQSN VFLVLWFYRM
801: YQVLVAAGDS KSAKEIASKI PNDDRDVKCV IKESSVVFTP KPKNKTTKKK RLSCQAK

Best Arabidopsis Sequence Match ( AT4G21880.1 )
(BLAST)

001: MALKAKKSLS AIFRFAMRNA AKTAEVEAKA VAGDSLISDT GPVSMSLIPD FLSSLKSPED SSNIGQDFGE PALAGQVSSA LDVKSIGYNL LRERNGEKVF
101: PKNVLETLDL LSRKGCSSQK PKQASRGRML TENYQNKQSE IMEKLAKGCV RKLGTETMFE VLTKMGKEAG EKEYNAMTKL CIQRARRSND AEYALDQIGK
201: AIEHLKEMRQ LGFSIGEGAY GPFFKYLVDM EMVAEFQILK DFIKEACPES CGRLVYYEML LWIQVNDEEK IHKLCNKVDD SGLSLSILQE YYLVALCEKD
301: SKENFQKLLE IVDITTVSSP DALKSIFGYL GKSLLESVAM KLLWELRDCR KDGVETVSNL IFSYATCIPN STVEDAIFKF NKLHEELDIV PSSTSYENLV
401: SYLCGSNEVV TALDIVENMC EAGLVISANI LHSLLQAIEQ ILEFNLVQRI YSIMSNKSVK PNSETFRKSI NLCIRIKDFE GAYNMLGNLK NFNLAPNSSM
501: YNSIMAGYFR EKKVNSALKV LKEMKEADVK PDSVTFSYLI NYCGEEATIA KYYKEMKQAG VEVNKHVYMS LVKAYASCGQ FEKAKQVLMD LEVPAKDHNE
601: LKSVLISALA SNGNITEALS IYEEMKKLRC PVEPKAILSL IENSDSNAEL GTLVELTHEL RDSKFWIDGF FKIIVFAVRN NRSSSILDLL EQTKNHLSKD
701: DVGVEYWFEE VFKSIAETES SDVKVGLDLV SFMKEELELC PSRKCLDFLL HACVNAKDKQ SALLVWEEYQ CAELPYNVIN YLRMYQVLVA AGDSKSAEAI
801: VSKIPNDDKD VKCIIKESRI VFTPKLKKKK KKSKQKGLSL QAK

Arabidopsis Description

Pentatricopeptide repeat-containing protein At4g21880, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:O49711]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.