CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY58269	Canola	nucleus	85.47	80.88
AT5G64360.7	Thale cress	nucleus	62.95	64.44
CDY31322	Canola	cytosol	46.11	58.71
CDY21586	Canola	cytosol	31.58	51.9
CDY69792	Canola	cytosol	31.16	50.51
VIT_03s0017g00300.t01	Wine grape	nucleus	41.26	40.33
KRH42098	Soybean	nucleus	36.84	38.46
KRH49811	Soybean	nucleus	37.68	38.0
CDY66640	Canola	cytosol	23.58	36.6
CDY46799	Canola	nucleus	29.47	35.71
CDY09423	Canola	cytosol	23.37	35.46
KRH21766	Soybean	nucleus	36.42	34.67
KRH10601	Soybean	nucleus	34.74	33.2
GSMUA_Achr3P06790_001	Banana	cytosol	20.84	30.46
Solyc07g007230.2.1	Tomato	nucleus	26.32	29.34
EER92178	Sorghum	nucleus	24.0	28.29
Zm00001d047214_P001	Maize	extracellular	23.58	28.21
GSMUA_Achr10P...	Banana	cytosol	24.63	27.79
HORVU4Hr1G039650.1	Barley	nucleus	22.53	26.88
Zm00001d029409_P001	Maize	nucleus, peroxisome, plastid	22.32	26.77
TraesCS4D01G156000.1	Wheat	nucleus	22.53	26.68
TraesCS4B01G160100.1	Wheat	cytosol	22.32	26.43
Os07t0620200-01	Rice	cytosol, mitochondrion, nucleus	21.89	26.26
TraesCS4A01G160900.1	Wheat	cytosol	21.68	25.75
Solyc11g006170.1.1	Tomato	nucleus	35.16	25.73
PGSC0003DMT400073845	Potato	cytosol	34.74	25.31
GSMUA_Achr1P21390_001	Banana	cytosol	21.05	24.81
Os03t0392400-01	Rice	nucleus	21.05	24.69
Solyc01g105780.2.1	Tomato	nucleus	37.05	24.55
PGSC0003DMT400079004	Potato	cytosol	26.32	24.46
PGSC0003DMT400083794	Potato	nucleus	36.63	23.42
Solyc11g006140.1.1	Tomato	nucleus	28.63	22.86
Os09t0463700-01	Rice	nucleus	17.89	22.85
TraesCS2A01G165100.1	Wheat	cytosol	18.74	22.76
TraesCS2B01G191300.1	Wheat	cytosol	18.74	22.7
HORVU5Hr1G055620.1	Barley	cytosol, nucleus, plastid	14.11	22.64
Zm00001d047043_P001	Maize	nucleus	20.63	22.63
HORVU2Hr1G030250.2	Barley	cytosol	18.53	22.62
TraesCS2D01G172200.1	Wheat	cytosol	18.53	22.51
KXG36712	Sorghum	cytosol	20.0	21.84
EES14021	Sorghum	nucleus	20.21	21.72
Zm00001d022168_P001	Maize	cytosol, mitochondrion, peroxisome	20.0	21.49
KXG35797	Sorghum	nucleus	16.63	20.57
CDY45473	Canola	nucleus	30.32	19.25
CDY45966	Canola	nucleus	29.68	18.95
Zm00001d020762_P001	Maize	nucleus	17.47	18.86
TraesCS5D01G252200.1	Wheat	cytosol, nucleus, plastid	19.37	17.46
TraesCS5B01G242900.1	Wheat	cytosol	19.16	17.27
TraesCS5A01G245400.1	Wheat	cytosol, nucleus, plastid	18.53	16.67
HORVU5Hr1G069570.1	Barley	nucleus	18.95	16.48

Protein Annotations

EnsemblPlants:CDX84519	EnsemblPlantsGene:GSBRNA2T00141752001	Gene3D:1.10.287.110	InterPro:DnaJ_domain	InterPro:IPR001623	InterPro:IPR036869
InterPro:J_dom_sf	PANTHER:PTHR45496	PFAM:PF00226	PFscan:PS50076	ProteinID:CDX84519	ProteinID:CDX84519.1
SEG:seg	SMART:SM00271	SUPFAM:SSF46565	UniParc:UPI0004EEE4E5	MapMan:12.5.1.16.2	:

Description

BnaC03g49810D

Coordinates

chrLK031837:-:1584333..1585760

Molecular Weight (calculated)

51706.6 Da

IEP (calculated)

5.796

GRAVY (calculated)

-0.487

Length

475 amino acids

Sequence
(BLAST)

001: MVGGGDDGRG GAAGSRGGNK AEADRLLVTS EKLLSSSDFQ GAKASAIRAC KSDPTLAEAA DSILTICDVL IASEIRLGNS KLPDWYAALR LGRLAQNPEH
101: VATQYRRLAL LLNPSVNRFP LADQAFKVVS DAWHVLSDPS RKSLYDQEVQ LSQLVQPQQK QRFIWKPSQS TTKVVAVSQH PPSVAPPATS TVGYPQRRSD
201: PTATSFWTAC PYCFVLFEYP KAYEECVLRC QDCRRAFQAV TIQKPPVEGK GEDVYFCSWS VFPLGFSGEF KAPSWSPISP LIACPLQMVD DERTTKKRKE
301: PAPPRFFYDD DDVYVAISED DHEENEPSDN CQDELQAKNA GKGKEKLVRS NKKRGADKAG KGIQHVESIG GASNHAASIA SYVTPVGSAS MSKPMSSKKR
401: TGTGAKNLGR LDLNVEFSNE VEEPAVAGGR NEGNGLGSNR EVDNMEGIGF FEDLDEFLSS LPIFSVDGDD KIKAT

Best Arabidopsis Sequence Match ( AT5G64360.4 )
(BLAST)

001: MVGGRGGVGG GGGNRVEADQ WLVTSEKLLA SSDLQGAKTF AIRACEADPT RAEAADYILA ICDILLAGET RLGDSNLPDW YAVLRLGRLA QNPEHVATQY
101: RRLALLLNPS VNRLPFADRA LKIVSDAWFV LSDPFKKSFY DRELQLSQLG QSGFHPQTQS HQNFQWEPSS STAVYPPPRS QSQAGTSADP MATSFWTACP
201: YCFVLFEYPK AYEECTLKCQ ECRRAFQAVT IPKPPVDKKD DEDVYFCSWA LFPLGFSGEF QAPSWSPISP LFACPLQKLD GEPKKRKEPG PPRIYYDDDD
301: IYVAISDGDD AGDDGDWQDV VQVNKKTNVG KGKETYVRSN KKHGVEEVQN VESISSASNH AVSIASNAAA VGSSTGVMSK PGSYITRKRM GTGAKNLGRL
401: DLNVEFSNEV EEPGVAGGGN AGNGIGSNRE VDNMEGIGFF EGLDEFLNSL PILSVVGDDK IKAT

Arabidopsis Description

AT5G64360 protein [Source:UniProtKB/TrEMBL;Acc:Q9FMF3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.