CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
plasma membrane 4
extracellular 4
endoplasmic reticulum 4
golgi 4
vacuole 4
nucleus 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY16866	Canola	vacuole	85.93	85.29
CDX90315	Canola	nucleus	68.15	62.16
CDY12124	Canola	nucleus	67.04	61.46
CDY56766	Canola	nucleus	51.3	51.68
CDX72715	Canola	nucleus	45.56	47.4
AT4G39160.2	Thale cress	nucleus	45.37	39.26
GSMUA_Achr2P23110_001	Banana	nucleus	7.22	27.27
HORVU6Hr1G080290.6	Barley	nucleus	12.78	26.14
TraesCS6B01G361300.1	Wheat	nucleus	12.22	24.81
TraesCS6D01G309500.4	Wheat	nucleus	11.85	24.06
KRH34776	Soybean	nucleus	17.96	19.48
PGSC0003DMT400045728	Potato	nucleus	23.52	17.79
Solyc02g081640.2.1	Tomato	nucleus	22.59	17.3
KRG92007	Soybean	nucleus	16.3	16.96
TraesCS6A01G330400.1	Wheat	nucleus, plastid	14.44	15.51
Zm00001d017507_P001	Maize	nucleus	15.19	15.44
KXG24287	Sorghum	nucleus	18.33	12.69
Zm00001d035113_P001	Maize	nucleus	19.07	12.29
OQU75762	Sorghum	nucleus	18.33	12.27
HORVU1Hr1G067100.2	Barley	nucleus	17.59	12.07
TraesCS1A01G314400.2	Wheat	nucleus	17.59	12.06
TraesCS1D01G314900.1	Wheat	nucleus	17.59	12.06
TraesCS1B01G326700.2	Wheat	nucleus	17.22	11.8
KRH77688	Soybean	nucleus	20.37	11.76
VIT_03s0038g04460.t01	Wine grape	nucleus	22.41	11.49
KRH27726	Soybean	nucleus	19.81	11.29
Zm00001d017505_P003	Maize	plastid	19.26	9.15
Os03t0840500-00	Rice	cytosol, nucleus	3.89	4.92

Protein Annotations

MapMan:15.4.3.2	MapMan:15.5.2.2	GO:A0A078DCV8	EnsemblPlants:CDX87111	ProteinID:CDX87111	ProteinID:CDX87111.1
GO:GO:0000126	GO:GO:0001026	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006383
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00146013001	InterPro:Homeobox-like_sf
PFAM:PF15963	PANTHER:PTHR22929	InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689	SignalP:SignalP-noTM
InterPro:TFIIIB_B''	UniParc:UPI0004EE556E	SEG:seg	:	:	:

Description

BnaC09g04260D

Coordinates

chrLK031849:+:524688..527722

Molecular Weight (calculated)

61279.4 Da

IEP (calculated)

4.526

GRAVY (calculated)

-1.106

Length

540 amino acids

Sequence
(BLAST)

001: MVSPSLSKSM FLLSQVLTFI SYFLLQAPKK DKVLPASSKP AKSRSGKQKK KNATGVAYVL HACSKLNSEG QKCDEGTEAV LAFPDDPRRQ DSATFGDFVT
101: SETDEVINAQ TQRMQTEGEV ECHWNMETLD IVQEEGITSA YEEQHSGKFQ PKPRLLDTVI EEEPGSHYSV DDTTGANQSE CMVNDESRND ECTNTAFYGE
201: YQEEEHNIPQ VHKESAPDVL EQEHRVVSPS NNDTVMGQGE TQFNEAETRT DKKGEKKRGR KKKATTNEEE ANKSPEKKKL KHSSRRQKNT LEKELLETPD
301: DDIKHLPIRD MLRLVAYRES LEKKEAKGAP VVPPTQESNN TNVSWDNQYY SQGFDAQDEF GMEEGENHVQ VKPDSPVNYQ TYMKKTPRTR WSEQETQVFY
401: EGIQAFGINL SMVQQFLPER RTLHQIKLKY KLEERKNPLK IDDALSTPCK DLTRYHIVLK KLQQEAAPAN EEEEPGEEAE TTSDVPENEE QTKTDGVAGD
501: GVKESDGEDV ENGVRSDGGD QFDENEGDDD DFWNSYKSEM

Best Arabidopsis Sequence Match ( AT4G39160.3 )
(BLAST)

001: MDLDFDDQPS DHAAPAVRAG ARFKPKGRPQ PKKKQVSLST TQTTLSPDVA QEKLSTQSED LVPLDGSSEI PSNALPSETN VPDSGSINKS TIGTLSEENE
101: DAFPRGVHWS VKPSILRACN NVNLVGNRRD DGIEATTSFP DDPRTQDSAI FGDYVTPETG ADEGRVDMET LDIVQEEGTT SSYVQHTGKL QPKPRLLETV
201: VEEPEPHYSA GDTGYFPMGT NESEFMANVE SRNGFSTYED LQEEELNIPE APRETVGEME AQNASGGWEQ EEQGVSPCIN NTVTGEEENC MGNTVEEQSK
301: RESKTGKSKR ATSRKRKKTS EEPNKSSEKT EQKKFKHSSR RQKRTLEKEL LETPDHEIRS LPLRDMLRLV EYKEWMQKKE AKGAGVQPSQ ESNNMNGSGS
401: QYHSQGFDEE DEFGDFGIES SEYQENNVVK PDSPVNYQTY MNKTSRTRWS KEDTELFYEG IQEFGSNLSM IQQLFPERTR EQMKLKFKLE ERRNPLKLND
501: ALSSRSKHFT HFKNVIKKLQ QEAAAAKEGE EEEEAGAEAE TTDVPENEEP EKSEETERAS DGVAAGVKES DGGDVENGVR SDGGDECDDD EDFWNSYKSD
601: M

Arabidopsis Description

Homeodomain-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4JVA4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.