CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY25627	Canola	nucleus	92.74	94.24
CDY31670	Canola	nucleus	52.11	55.09
AT2G22740.1	Thale cress	nucleus	57.12	54.81
CDX84255	Canola	nucleus	51.72	54.37
VIT_16s0013g00310.t01	Wine grape	nucleus	32.32	53.03
TraesCS3A01G520700.1	Wheat	nucleus	19.0	50.0
VIT_16s0013g00650.t01	Wine grape	nucleus	36.28	47.25
PGSC0003DMT400054167	Potato	nucleus	29.02	45.64
Solyc03g093740.1.1	Tomato	nucleus	17.02	42.02
Solyc03g093720.1.1	Tomato	nucleus	16.23	41.0
PGSC0003DMT400080404	Potato	nucleus, plastid	32.06	39.77
CDY04931	Canola	cytosol, extracellular, nucleus	3.96	39.47
CDY28970	Canola	cytosol	12.66	38.4
KRG90121	Soybean	nucleus	27.84	38.22
CDY40566	Canola	cytosol, plastid	13.72	36.75
TraesCS3B01G590300.1	Wheat	nucleus	30.21	36.47
PGSC0003DMT400080391	Potato	nucleus	21.5	36.3
PGSC0003DMT400092528	Potato	cytosol	10.16	35.98
Solyc03g093760.1.1	Tomato	nucleus	34.96	33.25
CDX70530	Canola	nucleus	25.59	32.17
CDX78549	Canola	nucleus	25.59	32.12
Solyc03g093710.1.1	Tomato	nucleus	35.49	32.1
CDY40567	Canola	mitochondrion	13.59	32.09
PGSC0003DMT400054154	Potato	nucleus	35.88	32.08
Solyc03g093700.1.1	Tomato	nucleus	34.83	31.47
PGSC0003DMT400054163	Potato	extracellular, nucleus	34.83	31.43
CDX77744	Canola	cytosol	13.72	31.33
CDY17156	Canola	nucleus	23.22	31.1
CDX80930	Canola	nucleus	26.25	30.9
CDY11319	Canola	nucleus	26.25	30.85
CDY59935	Canola	nucleus	26.78	30.8
CDY19475	Canola	nucleus	22.43	30.8
Os04t0544100-01	Rice	nucleus	34.17	30.8
CDX96449	Canola	nucleus	26.65	30.75
CDY33517	Canola	cytosol, mitochondrion, nucleus	13.46	30.72
Solyc03g093770.1.1	Tomato	golgi, plasma membrane	16.23	30.37
EES05802	Sorghum	nucleus	31.53	30.37
PGSC0003DMT400080398	Potato	nucleus	35.22	30.34
CDX68245	Canola	nucleus	26.65	30.33
CDY11129	Canola	nucleus	26.65	30.19
CDY28971	Canola	mitochondrion	13.59	30.12
CDY61331	Canola	nucleus	26.52	30.04
CDX98805	Canola	nucleus	25.73	29.77
CDX78210	Canola	nucleus	24.14	29.0
EES12588	Sorghum	nucleus	34.04	28.96
CDY23755	Canola	nucleus	24.27	28.89
CDY37735	Canola	nucleus, plastid	24.27	28.89
CDX98804	Canola	nucleus	23.35	28.87
CDX73506	Canola	nucleus	24.01	28.75
CDY33518	Canola	nucleus	13.59	28.3
CDY14135	Canola	nucleus	26.91	28.25
CDX77745	Canola	nucleus	14.12	27.79
CDY50660	Canola	nucleus	12.27	27.68
TraesCS2B01G409600.1	Wheat	nucleus	34.83	27.44
CDY51752	Canola	nucleus	12.01	27.08
TraesCS2D01G389100.1	Wheat	nucleus	34.17	26.98
CDY26218	Canola	nucleus	24.27	26.36
TraesCS2A01G389600.1	Wheat	mitochondrion, nucleus	34.43	25.89
CDY66122	Canola	nucleus	24.14	25.63
CDY56214	Canola	nucleus	24.8	23.71
CDY26221	Canola	nucleus	23.61	20.0
CDX70182	Canola	nucleus	26.52	19.86
CDX92067	Canola	nucleus	12.27	19.7
CDX74192	Canola	nucleus	12.14	19.7
CDY49341	Canola	nucleus	12.66	17.24
CDY14903	Canola	nucleus	13.46	15.94
CDX94744	Canola	nucleus	13.19	14.6
CDY22319	Canola	nucleus	13.19	14.18
CDX96935	Canola	nucleus	14.12	13.65
CDY42922	Canola	plasma membrane, vacuole	13.59	12.44
CDY46064	Canola	nucleus	7.26	11.18
CDY01852	Canola	plasma membrane	26.12	10.67
CDY62521	Canola	nucleus	14.64	8.13
CDY39668	Canola	nucleus	14.51	8.05
CDY15508	Canola	mitochondrion	0.0	0.0
CDX74191	Canola	mitochondrion	0.0	0.0
CDY42923	Canola	mitochondrion	0.0	0.0
CDY49340	Canola	cytosol	0.0	0.0
CDX86631	Canola	cytosol	0.0	0.0
CDX89821	Canola	cytosol	0.0	0.0
CDY18235	Canola	mitochondrion	0.0	0.0
CDX92068	Canola	mitochondrion	0.0	0.0
CDY53193	Canola	mitochondrion	0.0	0.0
CDY21127	Canola	cytosol	0.0	0.0

Protein Annotations

KEGG:00310+2.1.1.43	MapMan:12.3.3.7	Gene3D:2.170.270.10	Gene3D:2.30.280.10	GO:A0A078DJZ7	EnsemblPlants:CDX89510
ProteinID:CDX89510	ProteinID:CDX89510.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0008270	GO:GO:0009987	GO:GO:0016043	GO:GO:0016571	GO:GO:0016740
GO:GO:0018024	GO:GO:0019538	GO:GO:0034968	EnsemblPlantsGene:GSBRNA2T00149787001	InterPro:Hist-Lys_N-MeTrfase_plant	InterPro:IPR001214
InterPro:IPR003105	InterPro:IPR003616	InterPro:IPR007728	InterPro:IPR025794	InterPro:IPR036987	PFAM:PF00856
PFAM:PF02182	PFAM:PF05033	PFscan:PS50280	PFscan:PS50867	PFscan:PS50868	PFscan:PS51015
PFscan:PS51575	PANTHER:PTHR22884	PANTHER:PTHR22884:SF458	InterPro:PUA-like_sf	InterPro:Post-SET_dom	InterPro:Pre-SET_dom
InterPro:SET_dom	SMART:SM00317	SMART:SM00466	SMART:SM00468	InterPro:SRA-YDG_sf	InterPro:SRA_YDG
SUPFAM:SSF82199	SUPFAM:SSF88697	UniParc:UPI0004EDD2FA	SEG:seg	:	:

Description

BnaC04g35290D

Coordinates

chrLK031859:-:539758..542067

Molecular Weight (calculated)

84675.0 Da

IEP (calculated)

8.544

GRAVY (calculated)

-0.656

Length

758 amino acids

Sequence
(BLAST)

001: MVHAESVKLS SLSNGHVPQE KLGGDVLQNS TNVRVTASTK TLKFKRRKVF AHRDFPPGCG TPSMRLKARI AENVNVVGAD DHHPSAPSSE ANMNDPCKEE
101: KKSEQHPPND MELVVFESHV AKQEPEPKKE ESGELTVYTS DRHVEPVAVK PLRICLPDGN DKTAVKSSSS EPKRTHGAVK RKATKSVAFH EPLKVAKKMN
201: IDYGEGSKTK KNLYSRERGR SPDRGELHRQ PRTLQVGLPP SRPSGSSGGG DSRTKVKETL RLFYGACRKL LQEEEAKPVK QKRFRVDCEA AKILREKGKY
301: LNTGKHIMGA VPGIEVGDEF QYRMELNILG IHKPSQGGID YMKIGDEVFA TSIVASGGYD DELDNTDVLT YTGKEVPMPE DQKLVTGNLA LANSVKKKNP
401: VRVIRGNKKA VLESSGDKKG RSYVYDGLYF VETFWQETGS HGKLVFKFKL RRMPGQPELA WKVVKNTKKA EERVGLCRID ISEGHERLPI CAVNEIDDEE
501: PPSFIYTVKM IYPDWCRPIP PKGCRCTRRC AEAKDCACVA KNGGEIPYNY DGAIVSAKNL IYECGPLCKC PASCYLRVTQ RGIKFPLEIF KTESRGWGVR
601: SLSSIPSGSF ICEYVGELLE DKEAERRTGN DEYLFDIGNR YDNSLAEGMS KLMPETQPAM GGDDDEMSGF TIDAAKKGNI GRFINHSCSP NLYAQNVLYD
701: HEDTRIPHVM FFAMDNVPPL QELTYHYNYM IDQVRDSNGN IKKKICYCGS SDCTGRLY

Best Arabidopsis Sequence Match ( AT2G22740.2 )
(BLAST)

001: MEMGVMENLM VHTEISKVKS QSNGEVEKRG VSVLENGGVC KLDRMSGLKF KRRKVFAVRD FPPGCGSRAM EVKIACENGN VVEDVKVVES LVKEEESLGQ
101: RDASENVSDI RMAEPVEVQP LRICLPGGDV VRDLSVTAGD ECSNSEQIVA GSGVSSSSGT ENIVRDIVVY ADESSLGMDN LDQTQPLEIE MSDVAVAKPR
201: LVAGRKKAKK GIACHSSLKV VSREFGEGSR KKKSKKNLYW RDRESLDSPE QLRILGVGTS SGSSSGDSSR NKVKETLRLF HGVCRKILQE DEAKPEDQRR
301: KGKGLRIDFE ASTILKRNGK FLNSGVHILG EVPGVEVGDE FQYRMELNIL GIHKPSQAGI DYMKYGKAKV ATSIVASGGY DDHLDNSDVL TYTGQGGNVM
401: QVKKKGEELK EPEDQKLITG NLALATSIEK QTPVRVIRGK HKSTHDKSKG GNYVYDGLYL VEKYWQQVGS HGMNVFKFQL RRIPGQPELS WVEVKKSKSK
501: YREGLCKLDI SEGKEQSPIS AVNEIDDEKP PLFTYTVKLI YPDWCRPVPP KSCCCTTRCT EAEARVCACV EKNGGEIPYN FDGAIVGAKP TIYECGPLCK
601: CPSSCYLRVT QHGIKLPLEI FKTKSRGWGV RCLKSIPIGS FICEYVGELL EDSEAERRIG NDEYLFDIGN RYDNSLAQGM SELMLGTQAG RSMAEGDESS
701: GFTIDAASKG NVGRFINHSC SPNLYAQNVL YDHEDSRIPH VMFFAQDNIP PLQELCYDYN YALDQVRDSK GNIKQKPCFC GAAVCRRRLY

Arabidopsis Description

SUVH6Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH6 [Source:UniProtKB/Swiss-Prot;Acc:Q8VZ17]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.