CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra010701.1-P	Field mustard	nucleus	96.79	97.12
CDY12124	Canola	nucleus	90.54	91.0
CDY16866	Canola	vacuole	65.2	70.96
CDX87111	Canola	nucleus	62.16	68.15
CDY56766	Canola	nucleus	56.42	62.31
CDX72715	Canola	nucleus	52.7	60.12
AT4G39160.2	Thale cress	nucleus	58.61	55.61
GSMUA_Achr2P23110_001	Banana	nucleus	7.6	31.47
HORVU6Hr1G080290.6	Barley	nucleus	12.67	28.41
TraesCS6B01G361300.1	Wheat	nucleus	12.67	28.2
TraesCS6D01G309500.4	Wheat	nucleus	12.5	27.82
KRH34776	Soybean	nucleus	18.58	22.09
PGSC0003DMT400045728	Potato	nucleus	26.18	21.71
Solyc02g081640.2.1	Tomato	nucleus	24.49	20.57
KRG92007	Soybean	nucleus	17.06	19.46
TraesCS6A01G330400.1	Wheat	nucleus, plastid	14.02	16.5
Zm00001d017507_P001	Maize	nucleus	14.36	16.01
KXG24287	Sorghum	nucleus	20.1	15.26
HORVU1Hr1G067100.2	Barley	nucleus	19.93	14.99
TraesCS1A01G314400.2	Wheat	nucleus	19.76	14.85
TraesCS1D01G314900.1	Wheat	nucleus	19.76	14.85
TraesCS1B01G326700.2	Wheat	nucleus	19.43	14.59
Zm00001d035113_P001	Maize	nucleus	19.93	14.08
KRH77688	Soybean	nucleus	21.96	13.9
OQU75762	Sorghum	nucleus	18.58	13.63
VIT_03s0038g04460.t01	Wine grape	nucleus	23.65	13.3
KRH27726	Soybean	nucleus	21.28	13.29
Zm00001d017505_P003	Maize	plastid	19.59	10.21
Os03t0840500-00	Rice	cytosol, nucleus	7.09	9.84

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.4.3.2	MapMan:15.5.2.2	GO:A0A078DMA5	EnsemblPlants:CDX90315	ProteinID:CDX90315
ProteinID:CDX90315.1	ncoils:Coil	GO:GO:0000126	GO:GO:0001026	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006383	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
EnsemblPlantsGene:GSBRNA2T00150898001	InterPro:Homeobox-like_sf	PFAM:PF15963	PANTHER:PTHR22929	InterPro:SANT/Myb	SMART:SM00717
SUPFAM:SSF46689	InterPro:TFIIIB_B''	UniParc:UPI0004EF398A	SEG:seg	:	:

Description

BnaA08g16690D

Coordinates

chrLK031862:+:1201125..1204047

Molecular Weight (calculated)

66200.8 Da

IEP (calculated)

4.295

GRAVY (calculated)

-1.201

Length

592 amino acids

Sequence
(BLAST)

001: MDLDFDDESA APAARAGAKF KPRGRPQPKK KQAQTTLSTD VAKEKLLTQS EHPVSLDASS AYPSNVSASE TTVPDSGTIS QATMGTISKE SVSGGASVLR
101: ACTNLNSEGK RCVDDTETAP AYPDDPRRQD SAAFGDFVTS ETDEVIDDQT QRMQTGEEEE ECDWNMETLD IVQEECVTSA YEQHTGKFQP KPRLLDTVIE
201: EEPESHYSVD DDTTGANPSE FMVNEESRND EFNINTTFHG DHQEDEHNIP EQAPNVLEQE HHVVSPSNND TVMGEGATQS NEAETGADKK GKKKRGRKKK
301: TTTSEEEPNK PPPETTKKFK HSSRRQKNTL DKELLETPDD EIKHLPIRDM LRLVAYRESL EKKEAKGAPV VPPTQESNTH ASEDNHYYSQ GFDAEDEFGM
401: EEGENHEAPV VKPDSPVNYQ TYMNKTPRTR WSKQDTQLFY EGIQEFGSNL SMVQQLFPER TRQQIKLKYK LEERKNPLKL NDALSTRSKK LTHYHNVIKK
501: LQEEAAAAKE GEEEEEEGEE AGEEAETTTD VPENVSEPTK TEETERDGDG VAGVKESDGG DVENGVRSDG GDEIDDNEGD DDDFWNSYKS EM

Best Arabidopsis Sequence Match ( AT4G39160.3 )
(BLAST)

001: MDLDFDDQPS DHAAPAVRAG ARFKPKGRPQ PKKKQVSLST TQTTLSPDVA QEKLSTQSED LVPLDGSSEI PSNALPSETN VPDSGSINKS TIGTLSEENE
101: DAFPRGVHWS VKPSILRACN NVNLVGNRRD DGIEATTSFP DDPRTQDSAI FGDYVTPETG ADEGRVDMET LDIVQEEGTT SSYVQHTGKL QPKPRLLETV
201: VEEPEPHYSA GDTGYFPMGT NESEFMANVE SRNGFSTYED LQEEELNIPE APRETVGEME AQNASGGWEQ EEQGVSPCIN NTVTGEEENC MGNTVEEQSK
301: RESKTGKSKR ATSRKRKKTS EEPNKSSEKT EQKKFKHSSR RQKRTLEKEL LETPDHEIRS LPLRDMLRLV EYKEWMQKKE AKGAGVQPSQ ESNNMNGSGS
401: QYHSQGFDEE DEFGDFGIES SEYQENNVVK PDSPVNYQTY MNKTSRTRWS KEDTELFYEG IQEFGSNLSM IQQLFPERTR EQMKLKFKLE ERRNPLKLND
501: ALSSRSKHFT HFKNVIKKLQ QEAAAAKEGE EEEEAGAEAE TTDVPENEEP EKSEETERAS DGVAAGVKES DGGDVENGVR SDGGDECDDD EDFWNSYKSD
601: M

Arabidopsis Description

Homeodomain-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4JVA4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.