CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 4
mitochondrion 1
cytosol 1
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY11056	Canola	nucleus, plastid	94.52	94.61
AT4G25120.1	Thale cress	nucleus	86.21	82.3
GSMUA_Achr4P26310_001	Banana	cytosol	5.48	67.42
Solyc03g093850.1.1	Tomato	cytosol	34.43	61.9
VIT_16s0013g00300.t01	Wine grape	nucleus	52.88	53.56
GSMUA_Achr4P26320_001	Banana	cytosol, mitochondrion, nucleus	43.38	52.08
Solyc03g093840.1.1	Tomato	endoplasmic reticulum	11.23	51.9
Os07t0492100-01	Rice	plastid	52.69	49.53
EER97255	Sorghum	plastid	52.6	48.61
TraesCS2A01G226500.1	Wheat	plastid	51.96	47.65
TraesCS2D01G237200.2	Wheat	plastid	51.96	47.38
HORVU2Hr1G051300.27	Barley	plastid	51.32	46.26
Zm00001d006443_P001	Maize	nucleus	51.32	45.95
KRH33265	Soybean	endoplasmic reticulum, plasma membrane, vacuole	7.49	37.27
TraesCS2B01G254500.1	Wheat	plastid	4.66	13.82

Protein Annotations

Gene3D:1.10.10.160	Gene3D:1.10.486.10	Gene3D:3.40.50.300	MapMan:35.1	GO:A0A078DUU8	EnsemblPlants:CDX92677
ProteinID:CDX92677	ProteinID:CDX92677.1	InterPro:DExx_box_DNA_helicase_dom_sf	InterPro:DNA_helicase_UvrD-like_C	InterPro:DNA_helicase_UvrD/REP	GO:GO:0000166
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824	GO:GO:0004003	GO:GO:0005488
GO:GO:0005524	GO:GO:0016787	EnsemblPlantsGene:GSBRNA2T00154488001	InterPro:IPR013986	InterPro:IPR014016	InterPro:IPR014017
InterPro:P-loop_NTPase	PFAM:PF00580	PFAM:PF13361	PFscan:PS51198	PFscan:PS51217	PANTHER:PTHR11070
PANTHER:PTHR11070:SF2	SUPFAM:SSF52540	UniParc:UPI0004EDDE5C	InterPro:UvrD-like_ATP-bd	InterPro:UvrD/AddA_N	SEG:seg

Description

BnaC07g39350D

Coordinates

chrLK031873:+:291237..298436

Molecular Weight (calculated)

123203.0 Da

IEP (calculated)

6.766

GRAVY (calculated)

-0.542

Length

1095 amino acids

Sequence
(BLAST)

0001: MENHPPNRGM WNQEKSHTTR ISQCFRIAKR PSENAANSST PFPKRNKESM GSESISHNSS FKRTPLMELS ANTPPHKRLK PGFESSRVGL SIPAPDFSLD
0101: KEVLDASRSE VSADDSSDPF VTPLKDESER VTLSYGGGCS TSSLLDDEID DSILEEIDAI CEQSSARKIA CQTPSTSMTQ TPSKDNKSSD LEGGLDSRGV
0201: KMSEPDSEVK LEYEEATVAA DPALITSMPE ECSKYMQSLN DRQRDAACSD ISTPLMVIAG PGSGKTSTMV GRVLVLLNEG LQPSNILAMT FTTAATAEMR
0301: ERIGKSAGKK AAKEITISTF HSFSLQLCRM HADKLQRTSE FSVYGHGQQR RAIIEATRLY EVGKNGSSTS GACESAEGQM CPEYAKDRSK KWQKYVTQAK
0401: ASGRTPEECR KMGNEIGAKI LGNYSDILKA CDALDYHDLI SCSVTLLSDF PEVFKECQDT WKAIIVDEFQ DTSTMQYKLL RMLGSHNHIT IVGDDDQSIF
0501: GFNGADSSGF DSFRRDFPNY KEITVKECHN EEAQCAFVID KIIEITNDGS TPCCSHGDIA ILYRRQVSGK VFQNAFRQRK IPFNVHGVAF YRKKVVRIIL
0601: AMLRTTFSEC DDTSYRRVFK ALLPFEKEEK KRVIDHIDKI STSRKCSFII AANDIFSAKI SGTFKRSQLT QGRKVLQTLD MVAKLVDREQ SLSAVVTYVA
0701: NMIPQKYLLE QRAVVDNDGG KLLNEDNDLR SVLQYLMDDV AEFLSTHCTT TGEEVDAIKE KKGCNQLNSF INYISERETE NFRLRRHDNQ NSVTLTTIHQ
0801: SKGLEWDVVF IIKANDNEIP LLHESNGTAS EGGTSLEEER RLLYVAMTRA RKKLFFLYVT VDSNWQVLQP SRFLKEIPSH LLQVQNSGDL STNDCRKVHQ
0901: NLPNKTEQSV SNFGTELKHE DNEPTDNNMM NIPVDDATEE SLEAACALNG NNFLKRFDVE VRSVVSHLFH NWAKKQAFQD PKRLIDKVRF VIGERLAIKK
1001: EKHKEVLRAL KSSLTSEEAF QYAEHVLRWE QLPADTRAHI MREKQEHYQK LRIENSMGTS EATSKQIAFL HSLGCTVVPT SRLHASRLIE QYKSL

Best Arabidopsis Sequence Match ( AT4G25120.1 )
(BLAST)

0001: MENLPPNRGM WNQEYSHGRI SQSFRSAKPL LDRKRPIENA PNSSNPLPQR MKESMDTESV SHNINFNSTP LMELSANTPY KRLKPEIESY ADGHPCGLRT
0101: PPPRFDLDKE IINGFQTDIY ADVGSLSEAF VTPLKEPERV TLSNGCSTSS ILDDDFDDSI LEEIDLICEQ SARKAACQTP TTSIYQTPSK DNKSSDPKAS
0201: LDFRDVEKFE PDSNVKLKLD EETPTIAADP ALLNSMPDEC SKYMLSLNDR QRDAACSNIS TPLMVIAGPG SGKTSTMVGR VLVLLNEGLL PSNILAMTFT
0301: KAATSEMRER IGKSAGKKAA KDITISTFHS FSLQLCRMHA DKLQRTSEFS VYGHGQQRRA IIEAVRLYEE EKKNGSKTSV PCESGEGLNG AGAGAVCPEY
0401: AKDLSKKWQK FVTQGKASGK SPEQCRKMGN EIGAKILGNY NDILKACDAL DYHDLISCSV TLLSDFPEVF KECQDTWKAI IVDEFQDTST MQYKLLRMLG
0501: SHNHITIVGD DDQSIFGFNG ADSSGFDSFR RDFPNYKEVR LIKNYRSSRH IVEAASSIIK NNTKRCQSKS ISSENSQGSK ITVKECHNEE AQCAYVIDKI
0601: IEITNDGSTP CCSHGDIAIL YRRQVSGKVF QNAFRQRKIP FNVHGVAFYR KKVVQVILAM LKTTFSECDD ASYRRVFKAL LPFEKEEKKR IIEHIEKIST
0701: SRKCSFISAA SDIFNAKISG TFKRSQLTQG RKVLQTLDMV AKLVDREQSL SAVVTCVANM IPQKYLLEQR AVVDNDGGKL LNEDNDLRSV LQYLMDDVAE
0801: FISTHCTTTE EEDAIKEKKG CNQLHSFINY ISERETENFR SRRRDNENSV TLTTIHQSKG LEWDIVFIVK ANENEIPLLH ESNGNASESG TSLEEERRLL
0901: YVAMTRARKK LFFLYVTVDS NWQVLQPSRF LKEIPGHLLQ GDMSVNDCRK VHENLPNKTE QSVSSFGTDI KHEESKLTDN DVMNIPEDYA SEESIAAYAL
1001: NGNNFLKRFD VEVRSVVSHL FHNWAKKQAF QEPKRLIDKV RFVIGERLAI KKNKHKDVLR ALKSSLTSEE AFQYAEHVLR WEQLPADTRA HIVREKQEHF
1101: QKLRIENSMG TSEATSKQIA FLHSLGCTVV PTSRLHASRL IEQYKSL

Arabidopsis Description

SRS2ATP-dependent DNA helicase SRS2-like protein At4g25120 [Source:UniProtKB/Swiss-Prot;Acc:D1KF50]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.