CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 3
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY16646	Canola	plastid	94.67	95.36
AT4G04790.1	Thale cress	cytosol, mitochondrion	79.15	79.54
CDX79101	Canola	cytosol, mitochondrion	52.36	52.24
CDX82873	Canola	cytosol, mitochondrion	51.64	49.71
VIT_19s0014g05230.t01	Wine grape	cytosol	34.3	48.21
PGSC0003DMT400049471	Potato	cytosol	24.12	46.17
KRH55647	Soybean	cytosol	25.7	45.69
KRH25868	Soybean	cytosol, nucleus, plastid	15.15	44.96
GSMUA_Achr1P26200_001	Banana	extracellular	19.15	44.51
KRG88500	Soybean	cytosol	4.97	44.09
KRH25865	Soybean	cytosol	7.76	43.54
Solyc07g064110.2.1	Tomato	plastid	40.36	39.18
KRH22239	Soybean	cytosol	22.18	38.94
Os02t0132600-02	Rice	cytosol	25.21	38.52
KRH27097	Soybean	cytosol, mitochondrion	32.61	35.63
TraesCS6A01G096500.1	Wheat	cytosol, mitochondrion	33.33	31.9
TraesCS6B01G124900.1	Wheat	cytosol, plastid	33.58	31.8
TraesCS6D01G087600.1	Wheat	cytosol, plastid	33.09	31.67
HORVU6Hr1G017720.35	Barley	plastid	33.45	31.08
OQU84311	Sorghum	mitochondrion	34.42	29.01
Zm00001d015156_P001	Maize	plastid	33.58	28.91
GSMUA_Achr1P26220_001	Banana	plastid	14.3	27.7
KRH55650	Soybean	mitochondrion, plastid	12.0	25.58
KRG88502	Soybean	vacuole	11.64	25.46

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	EnsemblPlants:CDX94576	ProteinID:CDX94576	ProteinID:CDX94576.1	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00157855001	InterPro:IPR002885	InterPro:IPR011990	PFAM:PF01535
PFAM:PF17177	InterPro:PPR_long	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF623	InterPro:Pentatricopeptide_repeat
TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0004EB6D5F	SEG:seg	:	:

Description

BnaC09g22600D

Coordinates

chrLK031882:-:1311203..1315389

Molecular Weight (calculated)

93658.9 Da

IEP (calculated)

6.427

GRAVY (calculated)

-0.260

Length

825 amino acids

Sequence
(BLAST)

001: MVVSKANKLS SVFISRIKNS AQSSIPSAAT VKNGDIPGTS QAVKDLIRSK ISSSGTEAPL SDQISSLLHV SSLEKTEDNI LKIPSFNAKI PIDISLRSKE
101: LSRERKERRV YKKNALSRRF AKIFRDSAHK LGTDATFGAF DRVAKEMSVT EYNAMVGVYF ELAEKSHDLE YALDHIGKAF EILKTMRDRG FQIEESVYGP
201: VLEYLIDMDM VDEFRSFRDV ISETSPGLVE RLGYYEMLLW IQLGDGEKVE ELCGAIDGNG HCLTLLQENY LLALCKKEQK DHLQRLFEII DITKVRSLDL
301: LENIFGYLGK FSLDSLAKKF LWELRENDEG VKNVSDLISI YSTCTPNLTV EDTILKFNKM HEELDVMPSS TSYEKLVKYS CDSNEVVTAL DVVEKMGEAG
401: VTITADILHS LLHAIDEVLE FNLVRRIHSI MCTKSVKPSS ENFRSMIRLC TRIRDFEGAY NMLGNLKNFN LEPNSSMFNC ILAGYFREKN VCSALMVVKQ
501: MKEAGVKPDS ITYGYLINNC NREDTITKYY NEMKQAGVQA TKRIYMSLID AYAASGQFEN AKQVLLDPDV PARYQNELKS ELISALASHG KRADALILYE
601: EMKETKCQVD PKSIISLIEY CDSNGDLNTL VQLADDLQDD HSWIDGFFRM ILFAVRNRKS SNVLDLLKRN EVRLSKKDIH VEYHFDEVFW AIAETEPTEV
701: KLGMDLLRYI KEELGFVPSR KCLDFLLHAC VNAKDMKNGL LVWKEYQSAA LPCNVLSFLR QATNLAKMYQ VLLAAGDLEG AKTLVTKISK DDKDVQHVIE
801: ESQIVYSQTP EKKKPKKKRI VFPTK

Best Arabidopsis Sequence Match ( AT4G04790.1 )
(BLAST)

001: MVVSKVNKSL LSSVFKSRIR PTGESSIASG NKDIAGTSQA VKDLLSSKNS SSDLEEASLQ DRVSKLLHVT TSDKSSLEKN LFLKIPSFTT KIPYDISLRT
101: KELSRERKER RVYKQNGLSR RFAKIFRDSA QKLGTEAMFG AFDRVAKEMS VTEYNAMIGV YLEHAEKSND LDYALGHIEK AFELLKSMRD RGFLIEERVY
201: GPLLGYLIGM DMVDEFHSFK DVIREASPGS VERLGYYEML LWIHLGDGEK IEELCSTIDG DNGESLSVLQ ENYLLALCKK DQKYHLERLL EIVDITKVRS
301: SDLLANIFEY LGRFSLDSVA SRFLWELRES DEGVKNVSDL ISIYSTCTPN PTVEDTILKF NKMHEELDVM PSSTSYEKLV KYSCDSNEVV TALDVVEKMG
401: EAGLMISADI LHSLLHAIDE VLEFDLVRRI HSIMCTKSVK PNTENFRSII RLCTRIKDFE GAYNMLGNLK NFNLEPNSSM FNCILAGYFR EKNVSSALMV
501: VKQMKEAGVK PDSITFGYLI NNCTQEDAIT KYYEEMKQAG VQATKRIYMS LIDAYAASGK FEKAKQVLVD PDVPAINQNE LKSVLISALA SRGKWADALH
601: IYEEMRKAEC HVDPKSIISL IEYSDSKGEL STLVQLADDL QDDTSWIDGF FRMILFAVRN KKSSDIVDLL KRNKVRLLKK GIPVEAHFDE VFWAIAETEP
701: SKVHLGMDLL RFMKDELGFV PSRKCLDFLL HACVNAKDLE HGLLVWKEYQ SAAFPCNVLS FLRMYQVLLA AGDSEGAKAL VSKIPKDDKD VQHIIEESQS
801: AFSQAPNKKK PKKKMIVLST K

Arabidopsis Description

Pentatricopeptide repeat-containing protein At4g04790, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q6NQ81]
SUBAcon: [cytosol,mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.