CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 4
mitochondrion 1
cytosol 1
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX92677	Canola	nucleus, plastid	94.61	94.52
Bra019188.1-P	Field mustard	nucleus	97.17	93.25
AT4G25120.1	Thale cress	nucleus	85.65	81.69
GSMUA_Achr4P26310_001	Banana	cytosol	5.67	69.66
Solyc03g093850.1.1	Tomato	cytosol	34.19	61.41
VIT_16s0013g00300.t01	Wine grape	nucleus	52.92	53.56
Solyc03g093840.1.1	Tomato	endoplasmic reticulum	11.33	52.32
GSMUA_Achr4P26320_001	Banana	cytosol, mitochondrion, nucleus	43.33	51.97
Os07t0492100-01	Rice	plastid	52.65	49.44
EER97255	Sorghum	plastid	52.65	48.61
TraesCS2A01G226500.1	Wheat	plastid	52.19	47.82
TraesCS2D01G237200.2	Wheat	plastid	52.19	47.54
HORVU2Hr1G051300.27	Barley	plastid	51.65	46.5
Zm00001d006443_P001	Maize	nucleus	51.37	45.95
KRH33265	Soybean	endoplasmic reticulum, plasma membrane, vacuole	7.5	37.27
TraesCS2B01G254500.1	Wheat	plastid	4.75	14.09

Protein Annotations

Gene3D:1.10.10.160	Gene3D:1.10.486.10	Gene3D:3.40.50.300	MapMan:35.1	GO:A0A078FCL8	UniProt:A0A078FCL8
EnsemblPlants:CDY11056	ProteinID:CDY11056	ProteinID:CDY11056.1	InterPro:DExx_box_DNA_helicase_dom_sf	InterPro:DNA_helicase_UvrD-like_C	InterPro:DNA_helicase_UvrD/REP
GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824	GO:GO:0004003
GO:GO:0005488	GO:GO:0005524	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787
GO:GO:0032508	EnsemblPlantsGene:GSBRNA2T00049015001	InterPro:IPR013986	InterPro:IPR014016	InterPro:IPR014017	InterPro:P-loop_NTPase
PFAM:PF00580	PFAM:PF13361	PFscan:PS51198	PFscan:PS51217	PANTHER:PTHR11070	PANTHER:PTHR11070:SF2
SUPFAM:SSF52540	UniParc:UPI0004EDD495	InterPro:UvrD-like_ATP-bd	InterPro:UvrD/AddA_N	SEG:seg	:

Description

BnaA03g47150DBnaA03g47150D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FCL8]

Coordinates

chrLK032008:+:845057..852677

Molecular Weight (calculated)

123028.0 Da

IEP (calculated)

7.374

GRAVY (calculated)

-0.521

Length

1094 amino acids

Sequence
(BLAST)

0001: MENHPPNRGM WNQDHSHTRI TQSFRIAKRP SENAANSPTP FPKRSKESMG TESISHRSSF KRTPLMELSA NTPPHKRLKP GFESSHVGMS IPAPDFSLDK
0101: EVSADDRVSS DPFVTPLKDE SERVALSYGG GCSTSSLLDD DIDDSILEEI DAICEQSSAR KIACQTPSTT SMTQTPSKDN KSSDLEGGLD SRGVKMFKPD
0201: SESEVKLEFN GETAVAADPA LITSMPEECS KYMQSLNDRQ RDAACSDIST PLMVIAGPGS GKTSTMVGRV LVLLNEGLQP SNILAMTFTT AATAEMRERI
0301: GKSAGKKAAK EITISTFHSF SLQLCRMHAD KLQRTSEFSV YGHGQQRRAI IEAVRLYEEG KEGKNGSSTS AGAGAVCPEY AKDRSKKWQK YVTQAKASGR
0401: TPEECRKMGN EIGAKILGNY SDILKACDAL DYHDLISCSV TLLSDFPEVF KECQDTWKAI IVDEFQDTST MQYKLLRMLG SHNHITIVGD DDQSIFGFNG
0501: ADSSGFDSFR RDFPNYKEIT VKECHNEEAQ CAFVIDKIIE ITNDASAPCC SHGDIAILYR RQVSGKVFQN AFRQRKIPFN VHGVAFYRKK VVRVILAMLR
0601: TTFSECDDTS YRRVFKALLP FEKEEKKRVI DHIDKISTSR KCSFIIAAND IFSAKISGTF KRNQLTQGRK VLQTLDMVAK LVDREQSLSA VVTCVANMIP
0701: QKYLLEQRAV VDNDGGKLLN EDNDLRSVLQ YLMDDVAEFL STHCTTTGEE VDAIKKKKGC NQLNSFINYI SERETENFRL RRHDNQNSVT LTTIHQSKGL
0801: EWDVVFIIKA NDNEIPLLHE SNGTASEGGT SLEEERRLLY VAMTRARKKL FFLYVTVDSN WQVLQPSRFL KEIPSHLLQV QIRTQFGDLS INDCRQVHQN
0901: LPNKTEQSVS DFGTELKHED NKPTDKNMMN IPVDDATEES LEAACALNGN NFLKRFDVEA RSVVSHLFHN WAKKQAFQDP KRLIDKVRFV IGERLAIKKE
1001: KHKDVLRALK SSLTSDEAFQ YAEHVLRWEQ LPADTRAHIM REKQEHFQKL RIENSMGTSE ATSKQIAFLH SLGCTVVPTS RLHASRLIEQ YKSL

Best Arabidopsis Sequence Match ( AT4G25120.1 )
(BLAST)

0001: MENLPPNRGM WNQEYSHGRI SQSFRSAKPL LDRKRPIENA PNSSNPLPQR MKESMDTESV SHNINFNSTP LMELSANTPY KRLKPEIESY ADGHPCGLRT
0101: PPPRFDLDKE IINGFQTDIY ADVGSLSEAF VTPLKEPERV TLSNGCSTSS ILDDDFDDSI LEEIDLICEQ SARKAACQTP TTSIYQTPSK DNKSSDPKAS
0201: LDFRDVEKFE PDSNVKLKLD EETPTIAADP ALLNSMPDEC SKYMLSLNDR QRDAACSNIS TPLMVIAGPG SGKTSTMVGR VLVLLNEGLL PSNILAMTFT
0301: KAATSEMRER IGKSAGKKAA KDITISTFHS FSLQLCRMHA DKLQRTSEFS VYGHGQQRRA IIEAVRLYEE EKKNGSKTSV PCESGEGLNG AGAGAVCPEY
0401: AKDLSKKWQK FVTQGKASGK SPEQCRKMGN EIGAKILGNY NDILKACDAL DYHDLISCSV TLLSDFPEVF KECQDTWKAI IVDEFQDTST MQYKLLRMLG
0501: SHNHITIVGD DDQSIFGFNG ADSSGFDSFR RDFPNYKEVR LIKNYRSSRH IVEAASSIIK NNTKRCQSKS ISSENSQGSK ITVKECHNEE AQCAYVIDKI
0601: IEITNDGSTP CCSHGDIAIL YRRQVSGKVF QNAFRQRKIP FNVHGVAFYR KKVVQVILAM LKTTFSECDD ASYRRVFKAL LPFEKEEKKR IIEHIEKIST
0701: SRKCSFISAA SDIFNAKISG TFKRSQLTQG RKVLQTLDMV AKLVDREQSL SAVVTCVANM IPQKYLLEQR AVVDNDGGKL LNEDNDLRSV LQYLMDDVAE
0801: FISTHCTTTE EEDAIKEKKG CNQLHSFINY ISERETENFR SRRRDNENSV TLTTIHQSKG LEWDIVFIVK ANENEIPLLH ESNGNASESG TSLEEERRLL
0901: YVAMTRARKK LFFLYVTVDS NWQVLQPSRF LKEIPGHLLQ GDMSVNDCRK VHENLPNKTE QSVSSFGTDI KHEESKLTDN DVMNIPEDYA SEESIAAYAL
1001: NGNNFLKRFD VEVRSVVSHL FHNWAKKQAF QEPKRLIDKV RFVIGERLAI KKNKHKDVLR ALKSSLTSEE AFQYAEHVLR WEQLPADTRA HIVREKQEHF
1101: QKLRIENSMG TSEATSKQIA FLHSLGCTVV PTSRLHASRL IEQYKSL

Arabidopsis Description

SRS2ATP-dependent DNA helicase SRS2-like protein At4g25120 [Source:UniProtKB/Swiss-Prot;Acc:D1KF50]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.