CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX90315	Canola	nucleus	91.0	90.54
CDY16866	Canola	vacuole	64.52	69.85
CDX87111	Canola	nucleus	61.46	67.04
CDY56766	Canola	nucleus	58.57	64.37
CDX72715	Canola	nucleus	55.18	62.62
AT4G39160.2	Thale cress	nucleus	59.93	56.57
GSMUA_Achr2P23110_001	Banana	nucleus	7.64	31.47
TraesCS6B01G361300.1	Wheat	nucleus	12.9	28.57
TraesCS6D01G309500.4	Wheat	nucleus	12.56	27.82
HORVU6Hr1G080290.6	Barley	nucleus	12.39	27.65
PGSC0003DMT400045728	Potato	nucleus	26.99	22.27
KRH34776	Soybean	nucleus	18.34	21.69
Solyc02g081640.2.1	Tomato	nucleus	25.3	21.13
KRG92007	Soybean	nucleus	17.15	19.46
TraesCS6A01G330400.1	Wheat	nucleus, plastid	14.94	17.5
Zm00001d017507_P001	Maize	nucleus	14.26	15.82
TraesCS1A01G314400.2	Wheat	nucleus	20.37	15.23
HORVU1Hr1G067100.2	Barley	nucleus	20.2	15.12
TraesCS1D01G314900.1	Wheat	nucleus	20.2	15.1
KXG24287	Sorghum	nucleus	19.69	14.87
TraesCS1B01G326700.2	Wheat	nucleus	19.69	14.72
KRH77688	Soybean	nucleus	23.09	14.55
Zm00001d035113_P001	Maize	nucleus	20.03	14.08
KRH27726	Soybean	nucleus	22.41	13.92
OQU75762	Sorghum	nucleus	18.68	13.63
VIT_03s0038g04460.t01	Wine grape	nucleus	24.28	13.58
Zm00001d017505_P003	Maize	plastid	19.52	10.12
Os03t0840500-00	Rice	cytosol, nucleus	7.3	10.07

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.4.3.2	MapMan:15.5.2.2	GO:A0A078FGI4	UniProt:A0A078FGI4	EnsemblPlants:CDY12124
ProteinID:CDY12124	ProteinID:CDY12124.1	ncoils:Coil	GO:GO:0000126	GO:GO:0001026	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006359	GO:GO:0006383	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00061114001	InterPro:Homeobox-like_sf	PFAM:PF15963	PANTHER:PTHR22929
InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689	InterPro:TFIIIB_B''	UniParc:UPI0004EEA9D3	SEG:seg

Description

BnaC03g60400DBnaC03g60400D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FGI4]

Coordinates

chrLK032017:+:720538..723806

Molecular Weight (calculated)

65860.7 Da

IEP (calculated)

4.326

GRAVY (calculated)

-1.196

Length

589 amino acids

Sequence
(BLAST)

001: MDLDFDDEPA APAARAGAKF KPRGRPQPKK KQVPLSTSQT TLSTDVAKEK LSTQSEHPVS LEASSAYPSN VSTSETTVPD SGTINQSTMG TISKENVSGG
101: ASVLRACTNL NSEGKRCEDG TEAAPAYPDD PRRQDSATFG DSVTSETDEV IDDQTQRMQT GEVEEECDWN METLDIVQEE CITSAYEQHT GKFQPKPRLL
201: DTVIEEEPES HYSVDDTTGA NQSEFMVNEE SRNDEFNTNT IPEVHKETAA PSVLEQEHHV VSPSNNDTVM GEGETQSNEA ETGADKKGKK KRGRKKKTTT
301: SEEEPNKSAP EKKKKFKHSS RRQKNRTLDK ELLETPDDEI RNLPIRDMLR LVAYRESLEK KEAKGAPVVP PTQESNTNMS EDNHFYSQGF DAEDEFGMEE
401: GENHEAPVVK PDSPVNYQTY MNKTPRTRWS KQDTQLFYEG VQEFGSNLSM VQQLFPERTR QQIKLKYKLE ERKNPLKLND ALSTRSKQLT HYHNVIKKLQ
501: EEAAAAKEGE EEEEEGEEAG EEAETTTDVP ENEEPTKTEE TERAGDVVAG VKESDGGDVE NGVRSDGGDE IDDNEGDDDD FWNSYKSEM

Best Arabidopsis Sequence Match ( AT4G39160.3 )
(BLAST)

001: MDLDFDDQPS DHAAPAVRAG ARFKPKGRPQ PKKKQVSLST TQTTLSPDVA QEKLSTQSED LVPLDGSSEI PSNALPSETN VPDSGSINKS TIGTLSEENE
101: DAFPRGVHWS VKPSILRACN NVNLVGNRRD DGIEATTSFP DDPRTQDSAI FGDYVTPETG ADEGRVDMET LDIVQEEGTT SSYVQHTGKL QPKPRLLETV
201: VEEPEPHYSA GDTGYFPMGT NESEFMANVE SRNGFSTYED LQEEELNIPE APRETVGEME AQNASGGWEQ EEQGVSPCIN NTVTGEEENC MGNTVEEQSK
301: RESKTGKSKR ATSRKRKKTS EEPNKSSEKT EQKKFKHSSR RQKRTLEKEL LETPDHEIRS LPLRDMLRLV EYKEWMQKKE AKGAGVQPSQ ESNNMNGSGS
401: QYHSQGFDEE DEFGDFGIES SEYQENNVVK PDSPVNYQTY MNKTSRTRWS KEDTELFYEG IQEFGSNLSM IQQLFPERTR EQMKLKFKLE ERRNPLKLND
501: ALSSRSKHFT HFKNVIKKLQ QEAAAAKEGE EEEEAGAEAE TTDVPENEEP EKSEETERAS DGVAAGVKES DGGDVENGVR SDGGDECDDD EDFWNSYKSD
601: M

Arabidopsis Description

Homeodomain-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4JVA4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.