CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

plasma membrane 5
extracellular 7
endoplasmic reticulum 6
golgi 5
vacuole 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	endoplasmic reticulum
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY70376	Canola	extracellular	92.39	89.16
Bra027040.1-P	Field mustard	extracellular	80.8	72.88
AT1G62500.1	Thale cress	extracellular	71.01	65.99
KRH57376	Soybean	plasma membrane	36.23	55.87
KRH04104	Soybean	extracellular, plasma membrane	35.87	55.62
GSMUA_Achr4P26830_001	Banana	plastid	26.45	55.3
VIT_02s0154g00310.t01	Wine grape	extracellular, plasma membrane	44.57	50.62
PGSC0003DMT400093516	Potato	plastid	39.13	47.16
CDY59805	Canola	extracellular	38.04	44.49
CDY22735	Canola	extracellular	37.32	43.64
Solyc08g078890.1.1	Tomato	extracellular, golgi, plasma membrane	46.01	43.49
CDX81428	Canola	endoplasmic reticulum, plasma membrane	39.49	42.58
CDY06505	Canola	extracellular	30.43	40.38
CDY09061	Canola	extracellular	37.32	40.23
GSMUA_Achr4P29020_001	Banana	plastid	30.07	39.71
CDY18576	Canola	endoplasmic reticulum, plasma membrane	39.86	39.29
CDY22936	Canola	plasma membrane	39.49	37.46
CDY47794	Canola	extracellular	28.62	35.59
CDY19310	Canola	extracellular	31.52	32.22
CDY39502	Canola	extracellular	31.16	31.85

Protein Annotations

Gene3D:1.10.110.10	MapMan:35.1	UniProt:A0A078FID2	InterPro:Bifun_inhib/LTP/seed_sf	EnsemblPlants:CDY12951	ProteinID:CDY12951
ProteinID:CDY12951.1	EnsemblPlantsGene:GSBRNA2T00070639001	InterPro:Hydrophob_seed	PFAM:PF14547	PRINTS:PR01217	PFscan:PS51257
PANTHER:PTHR31731	PANTHER:PTHR31731:SF25	SUPFAM:SSF47699	SignalP:SignalP-noTM	UniParc:UPI0004EE8833	SEG:seg

Description

BnaA09g13230DBnaA09g13230D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FID2]

Coordinates

chrLK032028:+:793447..794373

Molecular Weight (calculated)

27480.1 Da

IEP (calculated)

8.727

GRAVY (calculated)

0.165

Length

276 amino acids

Sequence
(BLAST)

001: MGSRVSASFF IFLIATVITL PPTIQACTPC THPHPPVPKP PHQGGGGGGG GGGGGGGGGG GGGSKPPHHG GKGGGPPHHG GTSPPFVRPP PVVYPPPVVR
101: PPPISRPPPV VYPPPMVRPP PVTTPPGILP PIINPPPVTT PPGILPPITT PPGLLPPIIN PPPITTPPPS SGYPPYHGGP PSGGGSAQPT CPINALKLGA
201: CVDVLGGLIH IGLGNPVENV CCPVLQGLLE LEAAVCLCTT IRLKLLNLNI FIPLALQALI TCGINPPPGF ICPPLT

Best Arabidopsis Sequence Match ( AT2G10940.2 )
(BLAST)

001: MDSSKLSSLS LCLFLICIIY LPQHSLACGS CNPRKGGKHS PKAPKLPVPP VTVPKLPVPP VTVPKLPVPP VTVPKLPVPP VTIPKLPVPP VTVPKLPVPP
101: VTVPKLPVPP VTVPKLPVPP VTVPKLPVPP VTVPKLPVPP VTVPKLPLPP ISGLPIPPVV GPNLPLPPLP IVGPILPPGT TPPATGGKDC PPPPGSVKPP
201: SGGGKATCPI DTLKLGACVD LLGGLVKIGL GDPAVNKCCP LLKGLVEVEA AACLCTTLKL KALDLNLYVP VALQLLLTCG KNPPPGYTCS I

Arabidopsis Description

At2g10940/F15K19.1 [Source:UniProtKB/TrEMBL;Acc:Q9SKI0]
SUBAcon: [endoplasmic reticulum,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.