CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 3
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra029518.1-P	Field mustard	plastid	89.13	96.05
CDX94576	Canola	plastid	95.36	94.67
AT4G04790.1	Thale cress	cytosol, mitochondrion	78.51	78.32
CDX79101	Canola	cytosol, mitochondrion	52.5	52.0
CDX82873	Canola	cytosol, mitochondrion	51.65	49.36
VIT_19s0014g05230.t01	Wine grape	cytosol	34.31	47.87
PGSC0003DMT400049471	Potato	cytosol	23.93	45.48
KRH55647	Soybean	cytosol	25.27	44.61
GSMUA_Achr1P26200_001	Banana	extracellular	19.17	44.23
KRH25868	Soybean	cytosol, nucleus, plastid	14.9	43.88
KRG88500	Soybean	cytosol	4.88	43.01
KRH25865	Soybean	cytosol	7.69	42.86
KRH22239	Soybean	cytosol	22.47	39.15
Solyc07g064110.2.1	Tomato	plastid	40.29	38.82
Os02t0132600-02	Rice	cytosol	25.27	38.33
KRH27097	Soybean	cytosol, mitochondrion	32.97	35.76
TraesCS6A01G096500.1	Wheat	cytosol, mitochondrion	33.7	32.02
TraesCS6B01G124900.1	Wheat	cytosol, plastid	33.94	31.92
TraesCS6D01G087600.1	Wheat	cytosol, plastid	33.46	31.79
HORVU6Hr1G017720.35	Barley	plastid	33.7	31.08
OQU84311	Sorghum	mitochondrion	34.68	29.01
Zm00001d015156_P001	Maize	plastid	33.7	28.81
GSMUA_Achr1P26220_001	Banana	plastid	14.29	27.46
KRG88502	Soybean	vacuole	11.84	25.73
KRH55650	Soybean	mitochondrion, plastid	12.09	25.58

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	UniProt:A0A078FUH9	EnsemblPlants:CDY16646	ProteinID:CDY16646	ProteinID:CDY16646.1
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00094483001	InterPro:IPR002885	InterPro:IPR011990
PFAM:PF01535	PFAM:PF17177	InterPro:PPR_long	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF623
InterPro:Pentatricopeptide_repeat	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0004EDC26D	SEG:seg	:

Description

BnaA09g20240DBnaA09g20240D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FUH9]

Coordinates

chrLK032066:+:258491..262570

Molecular Weight (calculated)

92946.9 Da

IEP (calculated)

6.474

GRAVY (calculated)

-0.278

Length

819 amino acids

Sequence
(BLAST)

001: MVVSKANKLS SVFISRIKNS AQSSIPSAAT IKNRDIPGTS QAVKDLLKSK ITSSGTEAPL SDQISSLLHV SSLEKTDDNI LKIPNFNAKI PIDISLRSKE
101: LSRERKERRV YKKNALSRRF AKIFRDSAHK LGTDATFGAF DRVAKEMSVT EYNAMVGVYF ELAEKSHDLE YALDHIGKAF EVLKTMRDRG FQIEESVYGP
201: VLEYLIDMDM VDEFRGFKDV IGETSPGLVE RLGYYEMLLW IQLGDGEKVE ELCGDIDGNG DCLTLLQERY LLALCKKEQK DHLQRLFEII DITKVRSSDL
301: LANIFGYLSK FSLESFARKF LWELRESDEG VKNVSDLISI YSTCTPNLTV EDTILKFNKM HEELDVMPSS TSYEKLVKYS CDSNEVVTAL DVVEKMGEAG
401: VTITADILHS LLHAIDEVLE FNLVRRIHSI MCTKSVKPSN ENFRSMIRLC TRIRDFEGAY NMLGNLKNFK LEPNSSMFNC ILAGYFREKN VCSALMVVKQ
501: MKEAGVKPDS ITYGYLINNC NREDTITKYY NEMKQAGVQA TKRIYMSLID AYAASGQFEK AKQVLLDPDV PARYQNELKS ELISALASHG KRADALILYE
601: EMKETKCQVD PKSIISLIEY CDSNGDLNTL VQLADDLQDD HSWIDGFFRM ILFSVRNRKS SNVLDLLKRN EVRLSKKDIH VEYHFDEVFW AIAETEPTDV
701: KLGMDLLRYI KEELGFVPSR KSLDFLLHAC VNAKDMKNGL LVWKEYQSAA LPCNVLSFLR QASLVLLAAG DLEGAKTLAT KIPKEDKDVQ HVIEESQIVY
801: SQTPEKKKSN KKRIVFPGK

Best Arabidopsis Sequence Match ( AT4G04790.1 )
(BLAST)

001: MVVSKVNKSL LSSVFKSRIR PTGESSIASG NKDIAGTSQA VKDLLSSKNS SSDLEEASLQ DRVSKLLHVT TSDKSSLEKN LFLKIPSFTT KIPYDISLRT
101: KELSRERKER RVYKQNGLSR RFAKIFRDSA QKLGTEAMFG AFDRVAKEMS VTEYNAMIGV YLEHAEKSND LDYALGHIEK AFELLKSMRD RGFLIEERVY
201: GPLLGYLIGM DMVDEFHSFK DVIREASPGS VERLGYYEML LWIHLGDGEK IEELCSTIDG DNGESLSVLQ ENYLLALCKK DQKYHLERLL EIVDITKVRS
301: SDLLANIFEY LGRFSLDSVA SRFLWELRES DEGVKNVSDL ISIYSTCTPN PTVEDTILKF NKMHEELDVM PSSTSYEKLV KYSCDSNEVV TALDVVEKMG
401: EAGLMISADI LHSLLHAIDE VLEFDLVRRI HSIMCTKSVK PNTENFRSII RLCTRIKDFE GAYNMLGNLK NFNLEPNSSM FNCILAGYFR EKNVSSALMV
501: VKQMKEAGVK PDSITFGYLI NNCTQEDAIT KYYEEMKQAG VQATKRIYMS LIDAYAASGK FEKAKQVLVD PDVPAINQNE LKSVLISALA SRGKWADALH
601: IYEEMRKAEC HVDPKSIISL IEYSDSKGEL STLVQLADDL QDDTSWIDGF FRMILFAVRN KKSSDIVDLL KRNKVRLLKK GIPVEAHFDE VFWAIAETEP
701: SKVHLGMDLL RFMKDELGFV PSRKCLDFLL HACVNAKDLE HGLLVWKEYQ SAAFPCNVLS FLRMYQVLLA AGDSEGAKAL VSKIPKDDKD VQHIIEESQS
801: AFSQAPNKKK PKKKMIVLST K

Arabidopsis Description

Pentatricopeptide repeat-containing protein At4g04790, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q6NQ81]
SUBAcon: [cytosol,mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.