CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: vacuole

Predictor Summary:

plasma membrane 4
extracellular 4
endoplasmic reticulum 4
golgi 4
vacuole 5
plastid 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	vacuole
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	secretory
iPSORT:	plastid
MultiLoc:	nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	vacuole

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX87111	Canola	nucleus	85.29	85.93
CDX90315	Canola	nucleus	70.96	65.2
CDY12124	Canola	nucleus	69.85	64.52
CDY56766	Canola	nucleus	50.55	51.31
CDX72715	Canola	nucleus	45.96	48.17
AT4G39160.2	Thale cress	nucleus	48.71	42.47
GSMUA_Achr2P23110_001	Banana	nucleus	6.62	25.17
HORVU6Hr1G080290.6	Barley	nucleus	11.95	24.62
TraesCS6B01G361300.1	Wheat	nucleus	11.58	23.68
TraesCS6D01G309500.4	Wheat	nucleus	11.4	23.31
KRH34776	Soybean	nucleus	17.65	19.28
PGSC0003DMT400045728	Potato	nucleus	24.63	18.77
Solyc02g081640.2.1	Tomato	nucleus	23.71	18.3
KRG92007	Soybean	nucleus	16.54	17.34
Zm00001d017507_P001	Maize	nucleus	14.71	15.07
TraesCS6A01G330400.1	Wheat	nucleus, plastid	13.05	14.12
KRH77688	Soybean	nucleus	20.77	12.09
KXG24287	Sorghum	nucleus	17.28	12.05
HORVU1Hr1G067100.2	Barley	nucleus	17.1	11.82
Zm00001d035113_P001	Maize	nucleus	18.01	11.69
TraesCS1D01G314900.1	Wheat	nucleus	16.91	11.68
TraesCS1B01G326700.2	Wheat	nucleus	16.91	11.68
OQU75762	Sorghum	nucleus	17.28	11.65
TraesCS1A01G314400.2	Wheat	nucleus	16.73	11.55
KRH27726	Soybean	nucleus	20.04	11.5
VIT_03s0038g04460.t01	Wine grape	nucleus	21.69	11.21
Zm00001d017505_P003	Maize	plastid	18.38	8.8
Os03t0840500-00	Rice	cytosol, nucleus	4.41	5.62

Protein Annotations

MapMan:15.4.3.2	MapMan:15.5.2.2	GO:A0A078FV65	UniProt:A0A078FV65	EnsemblPlants:CDY16866	ProteinID:CDY16866
ProteinID:CDY16866.1	ncoils:Coil	GO:GO:0000126	GO:GO:0001026	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006359	GO:GO:0006383	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00094754001	InterPro:Homeobox-like_sf	PFAM:PF15963	PANTHER:PTHR22929	InterPro:SANT/Myb
SMART:SM00717	SUPFAM:SSF46689	SignalP:SignalP-noTM	InterPro:TFIIIB_B''	UniParc:UPI0004EE8A2F	SEG:seg

Description

BnaA09g05160DBnaA09g05160D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FV65]

Coordinates

chrLK032067:+:738819..741836

Molecular Weight (calculated)

61707.6 Da

IEP (calculated)

4.431

GRAVY (calculated)

-1.152

Length

544 amino acids

Sequence
(BLAST)

001: MFLLSLVLTI ISYFLLQAPK KDKVPPPSSK PAKSGGGNHN KKDATGVAYV LHACSELDSE GHRCDEGTEA VLAFPDDPRR QDSATFGDFV TSETDEVINA
101: QTQRMQTEGE VECHWDMETL DIVQEEGITS AYEEQHSGKF QPKPRLLDTV IEEEPGSHYS VDDTTGANQS ECMVNEESRN DECTNTAFYG EYQEEEHNIP
201: QVHKESAPDV LEQEHRVVSP SNNDTVMGQG ETQSNEAATR TDKKGGKKRG RKKKATTNEE EEEEEEANKS PEKKKKLKHS SRRQKKTLEK ELLETPDDDI
301: KHLPIRDMLR LVAYKESLEK KEAKGAPVVP PTQESNNTNA SWDDQYYSQG FDAQDEFGME EGENHVQVKP DSPVNYQTYM KKTPRTRWSK QETQVFYEGI
401: QAFGINLSMV QQFLPKRRTL HQIKLKYKLE ERKNPLKIDD ALSTPRKDLT RYHIVLKKLQ QEAAAAKEEE EAEEDAEEEA ETTSDVPENP ESEKTDERAG
501: DGVAGVKELD GEDVENGVRS DSGDQLDENE EDDDDFWNSY KSEM

Best Arabidopsis Sequence Match ( AT4G39160.1 )
(BLAST)

001: MDLDFDDQPS DHAAPAVRAG ARFKPKGRPQ PKKKQVSLST TQTTLSPDVA QEKLSTQSED LVPLDGSSEI PSNALPSETN VPDSGSINKS TIGTLSEENE
101: DAFPRGVHWS VKPSILRACN NVNLVGNRRD DGIEATTSFP DDPRTQDSAI FGDYVTPETG ADEGRVDMET LDIVQEEGTT SSYVQHTGKL QPKPRLLETV
201: VEEPEPHYSA GDTGYFPMGT NESEFMANVE SRNGFSTYED LQEEELNIPE APRETVGEME AQNASGGWEQ EEQGVSPCIN NTVTGEEENC MGNTVEEQSK
301: RESKTGKSKR ATSRKRKKTS EEPNKSSEKT EQKKFKHSSR RQKRTLEKEL LETPDHEIRS LPLRDMLRLV EYKEWMQKKE AKGAGVQPSQ ESNNMNGSGS
401: QYHSQGFDEE DEFGDFGIES SEYQENNVVK PDSPVNYQTY MNKTSRTRWS KEDTELFYEG IQEFGSNLSM IQQLFPERTR EQMKLKFKLE ERRNPLKLND
501: ALSSRSKHFT HFKNVIKKLQ QEAAAAKEGE EEEEAGAEAE TTDVPENEEP EKSEETERAS DGVAAGVKES DGGDVENGVR SDGGDECDDD EDFWNSYKSD
601: M

Arabidopsis Description

Homeodomain-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4JVA4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.