Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 2
- nucleus 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra024959.1-P | Field mustard | nucleus | 91.48 | 90.0 |
| CDX77745 | Canola | nucleus | 91.48 | 86.49 |
| CDY28970 | Canola | cytosol | 31.32 | 45.6 |
| CDY40566 | Canola | cytosol, plastid | 34.34 | 44.17 |
| AT5G47160.1 | Thale cress | mitochondrion | 50.27 | 44.1 |
| CDX77744 | Canola | cytosol | 36.81 | 40.36 |
| CDY33517 | Canola | cytosol, mitochondrion, nucleus | 36.54 | 40.06 |
| CDY40567 | Canola | mitochondrion | 34.89 | 39.56 |
| CDY28971 | Canola | mitochondrion | 35.44 | 37.72 |
| CDY31670 | Canola | nucleus | 31.04 | 15.76 |
| CDX84255 | Canola | nucleus | 31.04 | 15.67 |
| CDY25627 | Canola | nucleus | 28.02 | 13.67 |
| CDX80930 | Canola | nucleus | 24.18 | 13.66 |
| CDY59935 | Canola | nucleus | 24.73 | 13.66 |
| CDY11319 | Canola | nucleus | 24.18 | 13.64 |
| CDY11129 | Canola | nucleus | 25.0 | 13.6 |
| CDY61331 | Canola | nucleus | 25.0 | 13.6 |
| CDX89510 | Canola | nucleus | 28.3 | 13.59 |
| CDX96449 | Canola | nucleus | 24.45 | 13.55 |
| CDX68245 | Canola | nucleus | 24.73 | 13.51 |
| CDY37735 | Canola | nucleus, plastid | 22.8 | 13.03 |
| CDY23755 | Canola | nucleus | 22.8 | 13.03 |
| CDX98805 | Canola | nucleus | 23.08 | 12.82 |
| CDX70530 | Canola | nucleus | 21.15 | 12.77 |
| CDY19475 | Canola | nucleus | 19.23 | 12.68 |
| CDX78549 | Canola | nucleus | 20.88 | 12.58 |
| CDY17156 | Canola | nucleus | 18.68 | 12.01 |
| CDX78210 | Canola | nucleus | 20.6 | 11.89 |
| CDX73506 | Canola | nucleus | 20.6 | 11.85 |
| CDY14135 | Canola | nucleus | 22.8 | 11.5 |
| CDY66122 | Canola | nucleus | 21.7 | 11.06 |
| CDY26218 | Canola | nucleus | 21.15 | 11.03 |
| CDX98804 | Canola | nucleus | 17.58 | 10.44 |
| CDY56214 | Canola | nucleus | 21.15 | 9.71 |
| CDY26221 | Canola | nucleus | 21.43 | 8.72 |
| CDX70182 | Canola | nucleus | 23.08 | 8.3 |
| CDY01852 | Canola | plasma membrane | 20.6 | 4.04 |
| CDY50660 | Canola | nucleus | 3.02 | 3.27 |
| CDY22319 | Canola | nucleus | 6.04 | 3.12 |
| CDX96935 | Canola | nucleus | 6.59 | 3.06 |
| CDY51752 | Canola | nucleus | 2.75 | 2.98 |
| CDX94744 | Canola | nucleus | 5.49 | 2.92 |
| CDY14903 | Canola | nucleus | 4.95 | 2.81 |
| CDY39668 | Canola | nucleus | 6.87 | 1.83 |
| CDY62521 | Canola | nucleus | 6.59 | 1.76 |
| CDY46064 | Canola | nucleus | 2.2 | 1.63 |
| CDX92067 | Canola | nucleus | 1.92 | 1.48 |
| CDY42922 | Canola | plasma membrane, vacuole | 3.3 | 1.45 |
| CDX74192 | Canola | nucleus | 1.65 | 1.28 |
| CDY49341 | Canola | nucleus | 1.92 | 1.26 |
| CDX89821 | Canola | cytosol | 0.0 | 0.0 |
| CDX74191 | Canola | mitochondrion | 0.0 | 0.0 |
| CDY53193 | Canola | mitochondrion | 0.0 | 0.0 |
| CDY49340 | Canola | cytosol | 0.0 | 0.0 |
| CDY42923 | Canola | mitochondrion | 0.0 | 0.0 |
| CDX86631 | Canola | cytosol | 0.0 | 0.0 |
| CDY15508 | Canola | mitochondrion | 0.0 | 0.0 |
| CDX92068 | Canola | mitochondrion | 0.0 | 0.0 |
| CDY04931 | Canola | cytosol, extracellular, nucleus | 0.0 | 0.0 |
| CDY21127 | Canola | cytosol | 0.0 | 0.0 |
| CDY18235 | Canola | mitochondrion | 0.0 | 0.0 |
Protein Annotations
| Gene3D:2.30.280.10 | MapMan:35.1 | GO:A0A078H9M3 | UniProt:A0A078H9M3 | EnsemblPlants:CDY33518 | ProteinID:CDY33518 |
| ProteinID:CDY33518.1 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | EnsemblPlantsGene:GSBRNA2T00054770001 |
| InterPro:IPR003105 | InterPro:IPR036987 | PFAM:PF02182 | PFscan:PS51015 | PANTHER:PTHR22884 | PANTHER:PTHR22884:SF458 |
| InterPro:PUA-like_sf | SMART:SM00466 | InterPro:SRA-YDG_sf | InterPro:SRA_YDG | SUPFAM:SSF88697 | UniParc:UPI0004EF3FED |
| SEG:seg | : | : | : | : | : |
Description
BnaA06g35550DBnaA06g35550D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H9M3]
Coordinates
chrLK032315:+:412877..413971
Molecular Weight (calculated)
40926.9 Da
IEP (calculated)
10.791
GRAVY (calculated)
-0.728
Length
364 amino acids
Sequence
(BLAST)
(BLAST)
001: MRSLSDKKKR VSAVRDFPYG CGTRSVQNQR SVNGREVVQA AHEPSGVANR GYHHRPACPV NEAESIDEIM KKAGFNVPAR SVVDRGRSVS SHSKSCGSKV
101: KLLSSEEAFR LSASQSRRRQ LSHSHSSTSS ERKLQRTSPE NGNATALRRP VTHKPSQRRT PREQVQKVLR MFKLVFKALN KDKPGRHYEA RAILMNHEMH
201: VNDQKMIGRV PGIEIGDMFQ YKSELNLIGL HFNIRGGIDY ITRKGGFKLA TSIISSEGNG YMDRFNSDVM IYSGQGGNLT SKDQTVVKDQ KLETGNLALA
301: NSVEAKNPVR VIRGVKDSRG KCYVYDGLYL VQEYWREKGR GGSVVFRFKL CRVPGQDSTN LRYH
101: KLLSSEEAFR LSASQSRRRQ LSHSHSSTSS ERKLQRTSPE NGNATALRRP VTHKPSQRRT PREQVQKVLR MFKLVFKALN KDKPGRHYEA RAILMNHEMH
201: VNDQKMIGRV PGIEIGDMFQ YKSELNLIGL HFNIRGGIDY ITRKGGFKLA TSIISSEGNG YMDRFNSDVM IYSGQGGNLT SKDQTVVKDQ KLETGNLALA
301: NSVEAKNPVR VIRGVKDSRG KCYVYDGLYL VQEYWREKGR GGSVVFRFKL CRVPGQDSTN LRYH
001: MMMTQRISPS NKRRRVSFVR DFPQFSVKDE SDIGGDDVAT IKENLDGKED SNCVGVAYRD HHRPKEESFD SIMKKAGFNV ANGNLGNGKF PPSKRNVPLP
101: CEGKVQPLSV EEGIKLMAYE SQRRRCFGKP LVSTKVVQKH RYSPAKKKLS NATALRVRHS PMKKLSNASR LRANAHRPTQ HKDERRSGVL SVIQRNRLSK
201: DLTPRQKVQE VLRIFTLVFD ELDRNKAARR GGSETAKSRI DYQTWTILRE MGMQVNSQKR IGSVPGIKVG DKIQFKAALS VIGLHFGIMS GIDYMYKGNK
301: EVATSIVSSE GNDYGDRFIN DVMIYCGQGG NMRSKDHKAI KDQKLVGGNL ALANSIKEKT PVRVIRGERR LDNRGKDYVY DGLYRVEKYW EERGPQGNIL
401: FKFKLRRTCQ PYVDF
101: CEGKVQPLSV EEGIKLMAYE SQRRRCFGKP LVSTKVVQKH RYSPAKKKLS NATALRVRHS PMKKLSNASR LRANAHRPTQ HKDERRSGVL SVIQRNRLSK
201: DLTPRQKVQE VLRIFTLVFD ELDRNKAARR GGSETAKSRI DYQTWTILRE MGMQVNSQKR IGSVPGIKVG DKIQFKAALS VIGLHFGIMS GIDYMYKGNK
301: EVATSIVSSE GNDYGDRFIN DVMIYCGQGG NMRSKDHKAI KDQKLVGGNL ALANSIKEKT PVRVIRGERR LDNRGKDYVY DGLYRVEKYW EERGPQGNIL
401: FKFKLRRTCQ PYVDF
Arabidopsis Description
YDG domain-containing protein At5g47160 [Source:UniProtKB/Swiss-Prot;Acc:Q9LVU3]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.