CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
cytosol 2
mitochondrion 6
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY15508	Canola	mitochondrion	100.0	100.0
CDX89821	Canola	cytosol	57.86	100.0
CDX74191	Canola	mitochondrion	99.29	99.29
CDY18235	Canola	mitochondrion	99.29	99.29
CDX92068	Canola	mitochondrion	99.29	99.29
CDY21127	Canola	cytosol	57.14	98.77
CDY49340	Canola	cytosol	57.14	98.77
CDX86631	Canola	cytosol	57.14	98.77
CDY42923	Canola	mitochondrion	98.57	98.57
CDY49341	Canola	nucleus	14.29	3.59
CDY04931	Canola	cytosol, extracellular, nucleus	0.71	1.32
CDX74192	Canola	nucleus	3.57	1.07
CDX92067	Canola	nucleus	2.86	0.85
CDY42922	Canola	plasma membrane, vacuole	2.14	0.36
GSMUA_Achr5P27620_001	Banana	nucleus	0.71	0.16
CDX80930	Canola	nucleus	0.71	0.16
CDY11319	Canola	nucleus	0.71	0.16
CDX98805	Canola	nucleus	0.71	0.15
CDX96449	Canola	nucleus	0.71	0.15
CDY59935	Canola	nucleus	0.71	0.15
CDX68245	Canola	nucleus	0.71	0.15
CDY61331	Canola	nucleus	0.71	0.15
CDY11129	Canola	nucleus	0.71	0.15
CDY14135	Canola	nucleus	0.71	0.14
TraesCS4B01G280000.1	Wheat	nucleus	0.71	0.14
TraesCS3A01G385200.1	Wheat	plastid	0.71	0.14
CDY56214	Canola	nucleus	0.71	0.13
Os11t0602200-01	Rice	nucleus	0.71	0.12
EES10399	Sorghum	nucleus	0.71	0.12
TraesCS4D01G278500.1	Wheat	nucleus	0.71	0.12
EER96081	Sorghum	nucleus	0.71	0.12
TraesCS3B01G417400.1	Wheat	nucleus	0.71	0.12
TraesCS4A01G023500.1	Wheat	nucleus	0.71	0.12
Zm00001d019195_P001	Maize	nucleus	0.71	0.12
CDX70182	Canola	nucleus	0.71	0.1
CDY01852	Canola	plasma membrane	0.71	0.05
TraesCS3B01G367200.1	Wheat	nucleus	0.0	0.0
Os05t0490700-01	Rice	extracellular	0.0	0.0
Os11t0131600-00	Rice	nucleus	0.0	0.0
CDX84255	Canola	nucleus	0.0	0.0
Os12t0128450-00	Rice	nucleus	0.0	0.0
TraesCS1A01G308300.1	Wheat	nucleus	0.0	0.0
TraesCS1A01G362000.1	Wheat	nucleus	0.0	0.0
TraesCS1B01G319000.1	Wheat	nucleus	0.0	0.0
TraesCS1B01G378900.1	Wheat	nucleus	0.0	0.0
TraesCS1D01G307700.1	Wheat	nucleus	0.0	0.0
TraesCS1D01G366800.1	Wheat	nucleus	0.0	0.0
TraesCS3A01G336100.1	Wheat	nucleus	0.0	0.0
CDX78549	Canola	nucleus	0.0	0.0
TraesCS3B01G366900.1	Wheat	nucleus	0.0	0.0
OQU78645	Sorghum	nucleus	0.0	0.0
CDX78210	Canola	nucleus	0.0	0.0
TraesCS3D01G329100.1	Wheat	nucleus	0.0	0.0
TraesCS3D01G378200.1	Wheat	plastid	0.0	0.0
CDX77745	Canola	nucleus	0.0	0.0
CDX77744	Canola	cytosol	0.0	0.0
CDX73506	Canola	nucleus	0.0	0.0
TraesCS5A01G140500.1	Wheat	nucleus	0.0	0.0
TraesCS5B01G138800.1	Wheat	nucleus	0.0	0.0
TraesCS5D01G152000.1	Wheat	nucleus	0.0	0.0
Zm00001d010646_P001	Maize	plastid	0.0	0.0
CDX70530	Canola	nucleus	0.0	0.0
Zm00001d038541_P002	Maize	nucleus	0.0	0.0
Zm00001d041005_P001	Maize	nucleus	0.0	0.0
Zm00001d043135_P003	Maize	nucleus	0.0	0.0
CDY19475	Canola	nucleus	0.0	0.0
CDY26218	Canola	nucleus	0.0	0.0
CDY26221	Canola	nucleus	0.0	0.0
CDY28970	Canola	cytosol	0.0	0.0
CDY28971	Canola	mitochondrion	0.0	0.0
CDY31670	Canola	nucleus	0.0	0.0
CDY33517	Canola	cytosol, mitochondrion, nucleus	0.0	0.0
CDY33518	Canola	nucleus	0.0	0.0
CDY37735	Canola	nucleus, plastid	0.0	0.0
CDY39668	Canola	nucleus	0.0	0.0
CDY40566	Canola	cytosol, plastid	0.0	0.0
CDY40567	Canola	mitochondrion	0.0	0.0
CDY23755	Canola	nucleus	0.0	0.0
CDY22319	Canola	nucleus	0.0	0.0
CDY46064	Canola	nucleus	0.0	0.0
Os01t0811300-01	Rice	nucleus, plasma membrane	0.0	0.0
CDY17156	Canola	nucleus	0.0	0.0
CDY50660	Canola	nucleus	0.0	0.0
CDY51752	Canola	nucleus	0.0	0.0
CDY14903	Canola	nucleus	0.0	0.0
CDX98804	Canola	nucleus	0.0	0.0
CDY62521	Canola	nucleus	0.0	0.0
CDY66122	Canola	nucleus	0.0	0.0
CDX96935	Canola	nucleus	0.0	0.0
EES01635	Sorghum	nucleus	0.0	0.0
CDX94744	Canola	nucleus	0.0	0.0
EES19725	Sorghum	nucleus	0.0	0.0
CDX89510	Canola	nucleus	0.0	0.0
CDY25627	Canola	nucleus	0.0	0.0

Protein Annotations

MapMan:17.1.2.1.23	Gene3D:2.40.150.20	GO:A0A078FT90	UniProt:A0A078FT90	ProteinID:CDY15508.1	EnsemblPlants:CDY53193
ProteinID:CDY53193	ProteinID:CDY53193.1	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0030529	EnsemblPlantsGene:GSBRNA2T00008749001
InterPro:IPR036853	HAMAP:MF_01367	PFAM:PF00238	ScanProsite:PS00049	PANTHER:PTHR11761	PANTHER:PTHR11761:SF8
InterPro:Ribosomal_L14P	InterPro:Ribosomal_L14P_CS	InterPro:Ribosomal_L14_sf	SMART:SM01374	SUPFAM:SSF50193	UniParc:UPI0000E6470C

Description

BnaAnng12180DBnaA08g27920D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FT90]

Coordinates

chrLK033174:+:38476..39777

Molecular Weight (calculated)

15045.7 Da

IEP (calculated)

11.188

GRAVY (calculated)

-0.197

Length

140 amino acids

Sequence
(BLAST)

001: MSKRGRGGTS GNKFRMSLGL PVAATVNCAD NTGAKNLYII SVKGIKGRLN RLPSACVGDM VMATVKKGKP DLRKKVMPAV IVRQRKPWRR KDGVFMYFED
101: NAGVIVNPKG EMKGSAITGP IGKECADLWP RIASAANAIV

Best Arabidopsis Sequence Match ( AT1G04480.1 )
(BLAST)

001: MSKRGRGGTS GNKFRMSLGL PVAATVNCAD NTGAKNLYII SVKGIKGRLN RLPSACVGDM VMATVKKGKP DLRKKVLPAV IVRQRKPWRR KDGVFMYFED
101: NAGVIVNPKG EMKGSAITGP IGKECADLWP RIASAANAIV

Arabidopsis Description

RPL23AAt2g33370 [Source:UniProtKB/TrEMBL;Acc:Q1H559]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.