CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
golgi 1
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d029409_P001	Maize	nucleus, peroxisome, plastid	78.91	80.3
Zm00001d047214_P001	Maize	extracellular	77.67	78.84
TraesCS4A01G160900.1	Wheat	cytosol	67.49	68.0
Os03t0392400-01	Rice	nucleus	67.0	66.67
TraesCS4B01G160100.1	Wheat	cytosol	65.26	65.59
TraesCS4D01G156000.1	Wheat	nucleus	65.01	65.34
HORVU4Hr1G039650.1	Barley	nucleus	64.27	65.08
KXG36712	Sorghum	cytosol	46.9	43.45
GSMUA_Achr1P21390_001	Banana	cytosol	41.44	41.44
GSMUA_Achr10P...	Banana	cytosol	42.18	40.38
GSMUA_Achr3P06790_001	Banana	cytosol	32.01	39.69
Bra009389.1-P	Field mustard	cytosol	23.33	32.08
CDY69792	Canola	cytosol	23.33	32.08
CDY21586	Canola	cytosol	22.58	31.49
AT5G09540.1	Thale cress	nucleus	21.34	30.71
CDY31322	Canola	cytosol	26.05	28.15
Bra031921.1-P	Field mustard	cytosol	25.56	27.91
KXG35797	Sorghum	nucleus	24.81	26.04
VIT_03s0017g00300.t01	Wine grape	nucleus	30.27	25.1
EES14021	Sorghum	nucleus	26.8	24.43
Solyc07g007230.2.1	Tomato	nucleus	25.81	24.41
Bra024289.1-P	Field mustard	nucleus	27.54	24.18
KRH42098	Soybean	nucleus	27.3	24.18
CDX84519	Canola	nucleus	28.29	24.0
AT5G64360.7	Thale cress	nucleus	27.54	23.92
KRH49811	Soybean	nucleus	27.79	23.78
KRH10601	Soybean	nucleus	27.54	22.33
CDY58269	Canola	nucleus	27.54	22.11
KRH21766	Soybean	nucleus	27.3	22.04
PGSC0003DMT400079004	Potato	cytosol	25.56	20.16
CDY46799	Canola	nucleus	18.11	18.62
Solyc11g006170.1.1	Tomato	nucleus	27.54	17.1
Solyc01g105780.2.1	Tomato	nucleus	30.27	17.02
PGSC0003DMT400073845	Potato	cytosol	27.05	16.72
Solyc11g006140.1.1	Tomato	nucleus	24.57	16.64
PGSC0003DMT400083794	Potato	nucleus	30.02	16.29
CDY45966	Canola	nucleus	24.07	13.04
Bra027007.1-P	Field mustard	nucleus	23.82	12.87
CDY45473	Canola	nucleus	23.82	12.83
AT1G62970.1	Thale cress	nucleus	23.33	11.79

Protein Annotations

Gene3D:1.10.287.110	MapMan:35.2	EntrezGene:8080453	UniProt:C5WXN9	InterPro:DnaJ_domain	EnsemblPlants:EER92178
ProteinID:EER92178	ProteinID:EER92178.1	InterPro:IPR001623	InterPro:IPR036869	InterPro:J_dom_sf	PFscan:PS50076
PANTHER:PTHR45496	SMART:SM00271	EnsemblPlantsGene:SORBI_3001G349400	SUPFAM:SSF46565	UniParc:UPI0001A822CE	RefSeq:XP_002465180.1
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:+:63896696..63900469

Molecular Weight (calculated)

42290.7 Da

IEP (calculated)

6.110

GRAVY (calculated)

-0.374

Length

403 amino acids

Sequence
(BLAST)

001: MDFSAGGSGS GGGGGGGDSG DGQPQAERWL EIAEKLLSAR DLVGCKRFAE RAVEADPLLP GADELLAVAD VLLASQFMAP SGHPDPLAIL QLPPGAIPDH
101: ATVTRAFRRL ALLLGQQNPH PGAEMALRLV NDAYAVLSDP SRRAPQYANP ATGIPSSSQY AAAPAAAPAP DPPEFWTACP FCCFVHQYPR DLIGRALRCP
201: NEGCRRGFVA AEIPTPPTVV PGTEMYHCAW GFFPLGFPNS ADLGANWKPF YKVFPWNTAP SGQGGGRGRG QGSRGGRQPH SDSARGGSSR GRIKKTTARK
301: KVGAGPRRRL GAGVESGIDS EMLGQEGWAG DEDGGDGRAE EVRGININEA AQATDGTGRV NVSNAGGVED MGNFHIDVDA TEDILGNLHN LPFLRVDNLG
401: RMI

Best Arabidopsis Sequence Match ( AT2G01710.1 )
(BLAST)

001: MGDNNPNRSE AERLLGIAEK LLESRDLNGS KEFAILAQET EPLLEGTDQI LAVVDVLLSS APENRIKNQP NWYKILQIED LTESSTDNDL IKKQYRRLAL
101: LLHPDKNRFP FADQAFRFVL DAWEVLSTPT KKSQFDGDLN LIFTKVNLNT QKSKKKTTTN EKMSTFWTAC PYCYSLHEYP RVYQEYCIRC QNCQRAFHAA
201: SIPQLPPLIP GKDEYYCCWG FFPMGFVGGK GGEAAIANGV DAAKFPNWMP PVFSSGGVAA PPSGNGVSFD GWSGGAAKRD NEAVRSNNGV GVNSDGTPKK
301: RGRGRPKKNP V

Arabidopsis Description

Chaperone DnaJ-domain superfamily protein [Source:TAIR;Acc:AT2G01710]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.