CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plasma membrane 1
extracellular 1
endoplasmic reticulum 1
golgi 1
vacuole 1
plastid 4
nucleus 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	secretory
ChloroP:	plastid
EpiLoc:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
EER92178
EES14021
KXG35797
KXG36712

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G73100.1	EER92178	AT5G09540.1	21798944
AT1G73100.1	EES14021	AT5G09540.1	21798944
AT1G73100.1	KXG35797	AT5G09540.1	21798944
AT1G73100.1	KXG36712	AT5G09540.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d019195_P001	Maize	nucleus	91.45	88.67
TraesCS4B01G280000.1	Wheat	nucleus	69.52	79.59
EES10399	Sorghum	nucleus	78.31	79.37
Os11t0602200-01	Rice	nucleus	76.99	78.6
TraesCS4D01G278500.1	Wheat	nucleus	76.99	78.02
TraesCS3A01G385200.1	Wheat	plastid	67.47	77.14
TraesCS4A01G023500.1	Wheat	nucleus	77.11	76.74
TraesCS3D01G378200.1	Wheat	plastid	62.77	76.06
HORVU4Hr1G074120.1	Barley	nucleus	76.02	75.12
TraesCS3B01G417400.1	Wheat	nucleus	74.58	74.31
CDY04931	Canola	cytosol, extracellular, nucleus	5.06	55.26
GSMUA_Achr5P27620_001	Banana	nucleus	41.08	55.18
Bra009408.1-P	Field mustard	nucleus	32.29	52.34
EES19725	Sorghum	nucleus	42.41	52.23
EES01635	Sorghum	nucleus	43.25	48.38
KRH56252	Soybean	nucleus	12.41	48.36
CDY11319	Canola	nucleus	37.23	47.91
Bra005829.1-P	Field mustard	nucleus	37.11	47.75
Bra028776.1-P	Field mustard	nucleus	36.27	47.4
CDX80930	Canola	nucleus	36.63	47.2
CDX96449	Canola	nucleus	36.63	46.27
Solyc09g082050.2.1	Tomato	nucleus	36.02	46.21
AT5G04940.2	Thale cress	nucleus	37.11	45.97
CDX68245	Canola	nucleus	36.87	45.95
CDY11129	Canola	nucleus	36.99	45.89
CDY61331	Canola	nucleus	36.87	45.74
AT2G05900.1	Thale cress	cytoskeleton, cytosol, nucleus	17.11	45.51
CDX98805	Canola	nucleus	35.9	45.5
OQU78645	Sorghum	nucleus	40.84	45.44
Bra009409.1-P	Field mustard	nucleus	36.39	45.41
VIT_13s0047g00120.t01	Wine grape	nucleus	39.16	45.39
PGSC0003DMT400077329	Potato	nucleus	36.51	45.16
KRH20576	Soybean	nucleus	36.51	45.02
AT1G73100.1	Thale cress	nucleus	36.27	44.99
CDY59935	Canola	nucleus	35.66	44.92
KRH13229	Soybean	nucleus	36.39	44.87
Bra016018.1-P	Field mustard	nucleus	36.51	44.76
CDX98804	Canola	nucleus	32.17	43.56
KRH62706	Soybean	nucleus	34.22	42.58
KRH66648	Soybean	nucleus	36.14	42.37
VIT_08s0040g00360.t01	Wine grape	nucleus	37.35	42.06
CDY14135	Canola	nucleus	36.39	41.83
Solyc10g077070.1.1	Tomato	nucleus	35.66	41.46
PGSC0003DMT400018512	Potato	nucleus	35.78	41.36
KRG95012	Soybean	plastid	22.77	38.73
CDY26218	Canola	nucleus	32.29	38.4
AT1G17770.1	Thale cress	nucleus	31.08	37.23
CDY66122	Canola	nucleus	31.69	36.83
AT2G24740.1	Thale cress	nucleus	31.08	34.17
CDY56214	Canola	nucleus	32.29	33.8
OQU80399	Sorghum	nucleus	22.89	33.33
Bra025949.1-P	Field mustard	nucleus	32.53	30.24
CDY26221	Canola	nucleus	32.29	29.94
Bra004258.1-P	Field mustard	nucleus	33.13	29.92
CDX70182	Canola	nucleus	36.39	29.84
EES14036	Sorghum	nucleus	23.73	29.58
EER96294	Sorghum	nucleus	24.82	29.01
OQU88147	Sorghum	nucleus	23.01	27.52
EES01534	Sorghum	nucleus	10.48	25.66
OQU77925	Sorghum	nucleus	22.17	24.4
EES05802	Sorghum	nucleus	20.24	21.35
EES12588	Sorghum	nucleus	21.81	20.31
EES13797	Sorghum	nucleus	24.22	17.77
EER96634	Sorghum	nucleus	26.02	17.34
OQU85329	Sorghum	nucleus	14.1	17.26
EES13798	Sorghum	nucleus	25.06	16.51
EES15150	Sorghum	nucleus	13.73	15.43
CDY01852	Canola	plasma membrane	34.46	15.41
EES13161	Sorghum	nucleus	13.61	14.34
OQU80395	Sorghum	nucleus	10.24	14.33
KXG30908	Sorghum	nucleus	14.94	7.79
CDY21127	Canola	cytosol	0.12	1.23
CDX89821	Canola	cytosol	0.12	1.23
CDX86631	Canola	cytosol	0.12	1.23
CDY53193	Canola	mitochondrion	0.12	0.71

Protein Annotations

KEGG:00310+2.1.1.43	MapMan:12.3.3.7	MapMan:12.5.1.16.1	Gene3D:2.170.270.10	Gene3D:2.30.280.10	EntrezGene:8069112
InterPro:AT_hook_DNA-bd_motif	UniProt:C5XDD8	EnsemblPlants:EER96081	ProteinID:EER96081	ProteinID:EER96081.1	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005694	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0008168	GO:GO:0008270	GO:GO:0009987	GO:GO:0016043	GO:GO:0016571
GO:GO:0016740	GO:GO:0018024	GO:GO:0019538	GO:GO:0032259	GO:GO:0034968	GO:GO:0042393
InterPro:Hist-Lys_N-MeTrfase_plant	InterPro:IPR001214	InterPro:IPR003105	InterPro:IPR003616	InterPro:IPR007728	InterPro:IPR025794
InterPro:IPR036987	ProteinID:OQU88716.1	PFAM:PF00856	PFAM:PF02182	PFAM:PF05033	PRINTS:PR00929
PFscan:PS50280	PFscan:PS50867	PFscan:PS50868	PFscan:PS51015	PFscan:PS51575	PANTHER:PTHR22884
PANTHER:PTHR22884:SF479	InterPro:PUA-like_sf	InterPro:Post-SET_dom	InterPro:Pre-SET_dom	InterPro:SET_dom	SMART:SM00317
SMART:SM00384	SMART:SM00466	SMART:SM00468	EnsemblPlantsGene:SORBI_3002G079100	InterPro:SRA-YDG_sf	InterPro:SRA_YDG
SUPFAM:SSF82199	SUPFAM:SSF88697	unigene:Sbi.20916	UniParc:UPI0001A839BA	RefSeq:XP_002459560.1	SEG:seg

Description

hypothetical protein

Coordinates

chr2:+:8228737..8234625

Molecular Weight (calculated)

90677.9 Da

IEP (calculated)

8.498

GRAVY (calculated)

-0.491

Length

830 amino acids

Sequence
(BLAST)

001: MAQQMASVPL NDAAVVDAKP LRTLTPMFPA PLGLHTFTHQ NSPSVVCVTP FGPYAGGTEL GKPAVPPMFA APTPAAEAEP SQRQLDTANM NGAAHANGTA
101: VNSLVTPLQT PPSAATQESG KRKRGRPKRV LDTTVASVPS APLATTIPPV PSLPVVTPVP SAPQEGNTIV SLTPSSDAPQ ESGKRKRGRP KRVQDVPVMA
201: PPTSQGDSTP VIQTLPGPSV HEFGTRKRGR PKRLQDSSDI ATPIDSKDLP ISSPQPLSAA APAESGKRKR GRPKRVLDGS ATPSSHSGFS IDGDAVDTMK
301: RGRPRKIDTN LLQLPSLSSD DPRQTADNVL MMFDALRRRL MQMDDVKQVA KQQPNLKAGS IMINAELRVN KNKRIGEVPG VEVGDMFYFR IEMCLVGLNS
401: QSMAGIDYMS AKFGNEEDPV AISVVSAGVY DNTEDDPDIL VYTGQGMSGK DDQKLERGNL ALERSLHRGN PIRVIRSVKD MTCPTGKIYI YDGLYKIKEA
501: WVEKGKSGFN VFKHKLLREP GQPDGIAVWK KTEKWRENPS SRDHVILLDI SYGVESNPVC LVNEVDDEQG PSHFTYTTKL TYGNSLNSMR KMQGCKCISV
601: CLPGDNSCSC THRNAGDLPY SASGILVSRM PVLYECGDSC TCSYNCRNRV VQKGTQIRFE VFKTGERGWG LRSWDPIRAG TFICEYAGEI IDRNSVTGED
701: DYIFETSPSE QNLRWNYAPE LLGEPSLSDS NETPKRLPIV ISAKRTGNIA RFINHSCSPN VFWQPVLYDH GDEGYPHIAF FAIKHIPPMT ELTYDYGQNH
801: HPNIQMGTHS SFGKSKSCLC WSPKCRGSFG

Best Arabidopsis Sequence Match ( AT5G04940.1 )
(BLAST)

001: MERNGGHYTD KTRVLDIKPL RTLRPVFPSG NQAPPFVCAP PFGPFPPGFS SFYPFSSSQA NQHTPDLNQA QYPPQHQQPQ NPPPVYQQQP PQHASEPSLV
101: TPLRSFRSPD VSNGNAELEG STVKRRIPKK RPISRPENMN FESGINVADR ENGNRELVLS VLMRFDALRR RFAQLEDAKE AVSGIIKRPD LKSGSTCMGR
201: GVRTNTKKRP GIVPGVEIGD VFFFRFEMCL VGLHSPSMAG IDYLVVKGET EEEPIATSIV SSGYYDNDEG NPDVLIYTGQ GGNADKDKQS SDQKLERGNL
301: ALEKSLRRDS AVRVIRGLKE ASHNAKIYIY DGLYEIKESW VEKGKSGHNT FKYKLVRAPG QPPAFASWTA IQKWKTGVPS RQGLILPDMT SGVESIPVSL
401: VNEVDTDNGP AYFTYSTTVK YSESFKLMQP SFGCDCANLC KPGNLDCHCI RKNGGDFPYT GNGILVSRKP MIYECSPSCP CSTCKNKVTQ MGVKVRLEVF
501: KTANRGWGLR SWDAIRAGSF ICIYVGEAKD KSKVQQTMAN DDYTFDTTNV YNPFKWNYEP GLADEDACEE MSEESEIPLP LIISAKNVGN VARFMNHSCS
601: PNVFWQPVSY ENNSQLFVHV AFFAISHIPP MTELTYDYGV SRPSGTQNGN PLYGKRKCFC GSAYCRGSFG

Arabidopsis Description

SUVH1Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FF80]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.