CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 4

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER92178
EES14021
KXG35797
KXG36712

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G73100.1	EER92178	AT5G09540.1	21798944
AT1G73100.1	EES14021	AT5G09540.1	21798944
AT1G73100.1	KXG35797	AT5G09540.1	21798944
AT1G73100.1	KXG36712	AT5G09540.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER96081	Sorghum	nucleus	79.37	78.31
TraesCS4B01G280000.1	Wheat	nucleus	68.62	77.52
Os11t0602200-01	Rice	nucleus	76.68	77.24
TraesCS3A01G385200.1	Wheat	plastid	66.79	75.34
TraesCS4D01G278500.1	Wheat	nucleus	75.21	75.21
TraesCS4A01G023500.1	Wheat	nucleus	75.34	73.98
HORVU4Hr1G074120.1	Barley	nucleus	74.48	72.62
TraesCS3B01G417400.1	Wheat	nucleus	73.75	72.51
TraesCS3D01G378200.1	Wheat	plastid	60.56	72.41
CDY04931	Canola	cytosol, extracellular, nucleus	5.37	57.89
GSMUA_Achr5P27620_001	Banana	nucleus	40.78	54.05
EES19725	Sorghum	nucleus	42.86	52.08
Bra009408.1-P	Field mustard	nucleus	32.11	51.37
KRH56252	Soybean	nucleus	12.94	49.77
EES01635	Sorghum	nucleus	42.86	47.3
CDY11319	Canola	nucleus	36.63	46.51
Bra005829.1-P	Field mustard	nucleus	36.51	46.36
Bra028776.1-P	Field mustard	nucleus	35.65	45.98
AT2G05900.1	Thale cress	cytoskeleton, cytosol, nucleus	17.46	45.83
CDX80930	Canola	nucleus	36.02	45.81
OQU78645	Sorghum	nucleus	41.51	45.58
AT5G04940.2	Thale cress	nucleus	37.24	45.52
CDY11129	Canola	nucleus	37.0	45.29
CDX68245	Canola	nucleus	36.75	45.2
CDY61331	Canola	nucleus	36.87	45.14
VIT_13s0047g00120.t01	Wine grape	nucleus	39.44	45.11
CDX96449	Canola	nucleus	36.02	44.9
CDX98805	Canola	nucleus	35.53	44.43
AT1G73100.1	Thale cress	nucleus	36.14	44.25
KRH20576	Soybean	nucleus	36.26	44.13
Bra009409.1-P	Field mustard	nucleus	35.78	44.06
Solyc09g082050.2.1	Tomato	nucleus	34.8	44.05
CDY59935	Canola	nucleus	35.16	43.7
KRH13229	Soybean	nucleus	35.78	43.54
PGSC0003DMT400077329	Potato	nucleus	35.65	43.52
Bra016018.1-P	Field mustard	nucleus	35.9	43.43
KRH62706	Soybean	nucleus	35.04	43.03
CDX98804	Canola	nucleus	31.99	42.74
KRH66648	Soybean	nucleus	36.39	42.09
VIT_08s0040g00360.t01	Wine grape	nucleus	37.73	41.93
Solyc10g077070.1.1	Tomato	nucleus	35.53	40.76
PGSC0003DMT400018512	Potato	nucleus	35.53	40.53
CDY14135	Canola	nucleus	35.65	40.44
KRG95012	Soybean	plastid	22.95	38.52
AT1G17770.1	Thale cress	nucleus	31.75	37.52
CDY26218	Canola	nucleus	31.5	36.96
CDY66122	Canola	nucleus	30.65	35.15
CDY56214	Canola	nucleus	33.33	34.43
AT2G24740.1	Thale cress	nucleus	31.5	34.17
OQU80399	Sorghum	nucleus	22.47	32.28
Bra004258.1-P	Field mustard	nucleus	34.07	30.36
Bra025949.1-P	Field mustard	nucleus	31.87	29.23
CDY26221	Canola	nucleus	31.87	29.16
CDX70182	Canola	nucleus	35.78	28.95
EER96294	Sorghum	nucleus	24.66	28.45
EES14036	Sorghum	nucleus	23.08	28.38
OQU88147	Sorghum	nucleus	21.73	25.65
EES01534	Sorghum	nucleus	10.26	24.78
OQU77925	Sorghum	nucleus	20.88	22.68
EES05802	Sorghum	nucleus	19.41	20.2
EES12588	Sorghum	nucleus	21.37	19.64
EER96634	Sorghum	nucleus	26.01	17.09
OQU85329	Sorghum	nucleus	13.92	16.81
EES13797	Sorghum	nucleus	23.2	16.8
CDY01852	Canola	plasma membrane	35.53	15.68
EES13798	Sorghum	nucleus	23.93	15.56
EES15150	Sorghum	nucleus	13.43	14.88
OQU80395	Sorghum	nucleus	10.26	14.17
EES13161	Sorghum	nucleus	13.31	13.83
KXG30908	Sorghum	nucleus	15.26	7.85
CDY21127	Canola	cytosol	0.12	1.23
CDX89821	Canola	cytosol	0.12	1.23
CDX86631	Canola	cytosol	0.12	1.23
CDY53193	Canola	mitochondrion	0.12	0.71

Protein Annotations

KEGG:00310+2.1.1.43	MapMan:12.3.3.7	MapMan:12.5.1.16.1	Gene3D:2.170.270.10	Gene3D:2.30.280.10	EntrezGene:8065992
InterPro:AT_hook_DNA-bd_motif	UniProt:C5YC42	ncoils:Coil	EnsemblPlants:EES10399	ProteinID:EES10399	ProteinID:EES10399.1
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005694	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0008168	GO:GO:0008270	GO:GO:0009987	GO:GO:0016043
GO:GO:0016571	GO:GO:0016740	GO:GO:0018024	GO:GO:0019538	GO:GO:0032259	GO:GO:0034968
GO:GO:0042393	InterPro:Hist-Lys_N-MeTrfase_plant	InterPro:IPR001214	InterPro:IPR003105	InterPro:IPR003616	InterPro:IPR007728
InterPro:IPR025794	InterPro:IPR036987	ProteinID:KXG25798.1	PFAM:PF00856	PFAM:PF02182	PFAM:PF05033
PFscan:PS50280	PFscan:PS50867	PFscan:PS50868	PFscan:PS51015	PFscan:PS51575	PANTHER:PTHR22884
PANTHER:PTHR22884:SF479	InterPro:PUA-like_sf	InterPro:Post-SET_dom	InterPro:Pre-SET_dom	InterPro:SET_dom	SMART:SM00317
SMART:SM00384	SMART:SM00466	SMART:SM00468	EnsemblPlantsGene:SORBI_3006G013700	InterPro:SRA-YDG_sf	InterPro:SRA_YDG
SUPFAM:SSF82199	SUPFAM:SSF88697	UniParc:UPI0001A86C91	RefSeq:XP_002446071.1	SEG:seg	:

Description

hypothetical protein

Coordinates

chr6:+:1934396..1940123

Molecular Weight (calculated)

89264.0 Da

IEP (calculated)

8.672

GRAVY (calculated)

-0.563

Length

819 amino acids

Sequence
(BLAST)

001: MAQQTASPLN DSAVLDAKPL RMLTPMFPAP LGLHTFTPQN SPSVVCVTPF GPYAGGTGLG MAAGVPSMFA APAPPTDPRG EPDRVNTNGA AHANGAATNS
101: LATPSLQTPL SAGTPESSKT KRGRPKRVSD NMVPSATSTP LAPTVSPIPS LPKVPSPPQE NNNVVSPTPS SATPQESGKR KRGWPKRVQD IHVLATPLAP
201: QADNTPVLET PPAPTVHESG TRKRGRPKHL QDSLDTSTLS IHSKDSKPTS QTPATTSPEF GKRKRGRPRH VSDGSAAPNH SGFSTVDAAK RGQPRKIDTN
301: LLQLPTLSSD DPRESADNVL MMFDALRRRL IQLDEVKQAA KQQHNLKAGS IMTNAELRVN KNKQIGEVPG VEVGDMFYFR IEMCLVGLNS QNMAGIDYMS
401: AKFGNEEDPV AISVVSAGVY DNTEDDPYVL VYTGQGMSGK DDQKLERGNL ALERSLHRGN PIRVIRSVRD LTCPTSKIYI YDGLYKIKEA WVEKAKSGFN
501: VFKHKLLREP GQADGIAMWK KTEKWRGDPS SRDHVILGDM SYGVENKPVC LVNEVDDDKG PSQFTYMTKL NCGNLQCSMR KMQGCKCASL CLPGDNNCPC
601: THQNAGALPY SASGILVSRM PMLYECNDSC ICSNNCRNRV VQKGARIHFE VFKTGDRGWG LRSWDPIRAG TFICEYAGEI IDKNSVNGED DYIFETPPSE
701: PSLRWNYAPE LLGEPNLSGS NETPKQLPII ISAKRTGNVA RFMNHSCSPN VFWQPVLYDH GDEGHPHIAF FAMKHIPPMT ELTYDYGQSQ GNVQLGSNSG
801: CRKSKNCLCR SHKCRGSFG

Best Arabidopsis Sequence Match ( AT5G04940.1 )
(BLAST)

001: MERNGGHYTD KTRVLDIKPL RTLRPVFPSG NQAPPFVCAP PFGPFPPGFS SFYPFSSSQA NQHTPDLNQA QYPPQHQQPQ NPPPVYQQQP PQHASEPSLV
101: TPLRSFRSPD VSNGNAELEG STVKRRIPKK RPISRPENMN FESGINVADR ENGNRELVLS VLMRFDALRR RFAQLEDAKE AVSGIIKRPD LKSGSTCMGR
201: GVRTNTKKRP GIVPGVEIGD VFFFRFEMCL VGLHSPSMAG IDYLVVKGET EEEPIATSIV SSGYYDNDEG NPDVLIYTGQ GGNADKDKQS SDQKLERGNL
301: ALEKSLRRDS AVRVIRGLKE ASHNAKIYIY DGLYEIKESW VEKGKSGHNT FKYKLVRAPG QPPAFASWTA IQKWKTGVPS RQGLILPDMT SGVESIPVSL
401: VNEVDTDNGP AYFTYSTTVK YSESFKLMQP SFGCDCANLC KPGNLDCHCI RKNGGDFPYT GNGILVSRKP MIYECSPSCP CSTCKNKVTQ MGVKVRLEVF
501: KTANRGWGLR SWDAIRAGSF ICIYVGEAKD KSKVQQTMAN DDYTFDTTNV YNPFKWNYEP GLADEDACEE MSEESEIPLP LIISAKNVGN VARFMNHSCS
601: PNVFWQPVSY ENNSQLFVHV AFFAISHIPP MTELTYDYGV SRPSGTQNGN PLYGKRKCFC GSAYCRGSFG

Arabidopsis Description

SUVH1Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FF80]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.