CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d050594_P001	Maize	nucleus	41.3	54.03
EES18996	Sorghum	nucleus	55.07	52.78
Zm00001d024809_P001	Maize	nucleus	47.1	45.45
KXG21281	Sorghum	nucleus	28.26	45.09
KXG21283	Sorghum	nucleus	36.59	41.39
TraesCS1B01G283000.1	Wheat	nucleus	24.64	37.78
OQU77390	Sorghum	nucleus	31.52	35.66
TraesCS7B01G093600.1	Wheat	nucleus	22.46	34.44
TraesCS7B01G019400.1	Wheat	nucleus	28.62	33.05
EER88198	Sorghum	nucleus	37.68	32.7
TraesCS7A01G188800.1	Wheat	nucleus	21.38	32.6
TraesCS7D01G189800.2	Wheat	nucleus	22.83	31.82
OQU76057	Sorghum	nucleus	35.14	31.6
EER89299	Sorghum	nucleus	34.78	31.37
EER89573	Sorghum	nucleus	35.87	31.33
EER94504	Sorghum	nucleus	32.25	30.9
TraesCS7D01G118600.1	Wheat	nucleus	30.43	30.66
EER88196	Sorghum	nucleus	34.78	30.38
HORVU7Hr1G024150.1	Barley	nucleus	26.09	30.25
TraesCS7B01G019200.1	Wheat	nucleus	29.71	29.93
TraesCS7A01G120900.1	Wheat	nucleus	27.9	29.84
TraesCS7A01G121100.1	Wheat	nucleus	28.99	29.2
TraesCS7D01G108000.1	Wheat	nucleus	28.99	29.2
TraesCS7D01G108100.1	Wheat	nucleus	28.62	28.94
EES18997	Sorghum	nucleus	38.41	28.19
HORVU7Hr1G038390.1	Barley	mitochondrion, nucleus, plastid	20.65	27.8
TraesCS7A01G135300.1	Wheat	nucleus	28.99	27.4
KXG21280	Sorghum	nucleus	35.14	27.25
EER89387	Sorghum	nucleus	31.16	27.04
OQU77389	Sorghum	nucleus	31.52	26.05
TraesCS1B01G374300.1	Wheat	nucleus	32.61	25.71
TraesCS1D01G362000.1	Wheat	nucleus	28.26	25.66
KXG21278	Sorghum	nucleus	31.52	25.29
TraesCS1A01G357600.1	Wheat	nucleus	31.88	25.14
HORVU7Hr1G025580.1	Barley	cytosol, nucleus, plastid	26.81	24.83
HORVU1Hr1G080380.1	Barley	nucleus	30.07	24.63
HORVU7Hr1G028140.1	Barley	nucleus	19.2	24.54
TraesCS7B01G036700.1	Wheat	nucleus	33.33	21.5
TraesCS7A01G135000.1	Wheat	nucleus	32.97	21.21
TraesCS7D01G135300.1	Wheat	nucleus	32.97	21.16
TraesCS7D01G135200.1	Wheat	nucleus	32.61	20.98
TraesCS7B01G036500.1	Wheat	nucleus	32.61	20.93
TraesCS7A01G135100.1	Wheat	nucleus	31.88	20.51
TraesCS7A01G135200.1	Wheat	nucleus	31.88	20.51
TraesCS7D01G135700.1	Wheat	nucleus	32.25	20.46
TraesCS7D01G135000.1	Wheat	nucleus	31.52	20.23
TraesCS7A01G135400.1	Wheat	nucleus	30.8	19.77
Os06t0173800-00	Rice	vacuole	23.19	19.57
TraesCS7D01G135500.1	Wheat	nucleus	27.9	19.2
TraesCS7D01G135600.1	Wheat	nucleus	24.64	19.1
PGSC0003DMT400086891	Potato	nucleus	13.77	17.59
Solyc02g082380.1.1	Tomato	nucleus	13.04	16.22
TraesCS2D01G567700.1	Wheat	nucleus	21.74	15.87
TraesCS2B01G617700.1	Wheat	nucleus	22.46	15.54
Solyc02g082390.1.1	Tomato	nucleus	13.04	12.81
KXG36349	Sorghum	nucleus	13.41	10.08
PGSC0003DMT400091980	Potato	nucleus	11.96	8.19
OQU89906	Sorghum	nucleus	8.33	6.82

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.2	EntrezGene:8075952	UniProt:C5YZN9	EnsemblPlants:EES18995	ProteinID:EES18995
ProteinID:EES18995.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:Homeobox-like_sf	InterPro:IPR017930
InterPro:Myb_dom	InterPro:Myb_dom_plants	PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR44042	PANTHER:PTHR44042:SF3
InterPro:SANT/Myb	SMART:SM00717	EnsemblPlantsGene:SORBI_3009G039000	SUPFAM:SSF46689	TIGRFAMs:TIGR01557	UniParc:UPI0001A88B97
RefSeq:XP_002440565.1	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr9:-:3674616..3675903

Molecular Weight (calculated)

31717.2 Da

IEP (calculated)

7.380

GRAVY (calculated)

-0.719

Length

276 amino acids

Sequence
(BLAST)

001: MDPKFNGDWT ANEIETVRSI IASHDAKIRW SNNRDAMHYG IVEELHARFP RKDKRQVIDL YVDLVVEMVN AIPMSSNQLP MTVSNGHVVD NFEVTVENLG
101: VHNMDEMKAQ RMVEEQHHRK VVVPQQDKQR ARRFWTLDEH RNFLFGLCAY GRGNWKNISK DFVTTKTPVQ VSSHAQKFFR RQESTTKKQR YSINDVSLYD
201: TKPCSNAYNP YCYGSGGQLT SMDNLTQVYS PFQGPASQAG SSHTITWAAG QQTPLHSSAT PVMEEDGTQM EWTNYY

Best Arabidopsis Sequence Match ( AT5G08520.1 )
(BLAST)

001: MTVEEVSDGS VWSREDDIAF ERALANNTDE SEERWEKIAA DVPGKSVEQI KEHYELLVED VTRIESGCVP LPAYGSPEGS NGHAGDEGAS SKKGGNSHAG
101: ESNQAGKSKS DQERRKGIAW TEDEHRLFLL GLDKYGKGDW RSISRNFVVT RTPTQVASHA QKYFIRLNSM NKDRRRSSIH DITSVGNADV STPQGPITGQ
201: NNSNNNNNNN NNNSSPAVAG GGNKSAKQAV SQAPPGPPMY GTPAIGQPAV GTPVNLPAPP HMAYGVHAAP VPGSVVPGAA MNIGQMPYTM PRTPTAHR

Arabidopsis Description

SRM1Transcription factor SRM1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FNN6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.