CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU77389	Sorghum	nucleus	61.97	69.76
KXG21280	Sorghum	nucleus	65.69	69.38
Zm00001d024810_P001	Maize	nucleus	70.74	68.21
KXG21278	Sorghum	nucleus	60.64	66.28
KXG21281	Sorghum	nucleus	24.47	53.18
KXG21283	Sorghum	nucleus	32.18	49.59
EES18996	Sorghum	nucleus	34.84	45.49
OQU77390	Sorghum	nucleus	26.6	40.98
OQU76057	Sorghum	nucleus	32.71	40.07
EER88198	Sorghum	nucleus	33.51	39.62
EER89573	Sorghum	nucleus	32.71	38.92
EES18995	Sorghum	nucleus	28.19	38.41
EER88196	Sorghum	nucleus	32.18	38.29
EER89299	Sorghum	nucleus	30.05	36.93
EER94504	Sorghum	nucleus	27.39	35.76
EER89387	Sorghum	nucleus	28.72	33.96
TraesCS1B01G283000.1	Wheat	nucleus	15.16	31.67
TraesCS7B01G019200.1	Wheat	nucleus	22.87	31.39
TraesCS7B01G019400.1	Wheat	nucleus	19.41	30.54
TraesCS7D01G118600.1	Wheat	nucleus	21.81	29.93
TraesCS7A01G120900.1	Wheat	nucleus	20.21	29.46
TraesCS7D01G108000.1	Wheat	nucleus	21.28	29.2
TraesCS7A01G188800.1	Wheat	nucleus	13.83	28.73
TraesCS7D01G108100.1	Wheat	nucleus	20.74	28.57
TraesCS7A01G121100.1	Wheat	nucleus	20.74	28.47
TraesCS7B01G093600.1	Wheat	nucleus	13.56	28.33
TraesCS1D01G362000.1	Wheat	nucleus	22.87	28.29
TraesCS1B01G374300.1	Wheat	nucleus	25.53	27.43
HORVU7Hr1G024150.1	Barley	nucleus	17.29	27.31
HORVU1Hr1G080380.1	Barley	nucleus	24.47	27.3
TraesCS1A01G357600.1	Wheat	nucleus	25.0	26.86
TraesCS7A01G135300.1	Wheat	nucleus	20.48	26.37
TraesCS7D01G189800.2	Wheat	nucleus	13.56	25.76
HORVU7Hr1G025580.1	Barley	cytosol, nucleus, plastid	20.21	25.5
HORVU7Hr1G028140.1	Barley	nucleus	14.1	24.54
HORVU7Hr1G038390.1	Barley	mitochondrion, nucleus, plastid	12.77	23.41
Os06t0173800-00	Rice	vacuole	18.62	21.41
TraesCS7B01G036700.1	Wheat	nucleus	22.87	20.09
TraesCS7A01G135200.1	Wheat	nucleus	22.87	20.05
TraesCS7D01G135000.1	Wheat	nucleus	22.87	20.0
TraesCS7A01G135000.1	Wheat	nucleus	22.61	19.81
TraesCS7B01G036500.1	Wheat	nucleus	22.61	19.77
TraesCS7D01G135300.1	Wheat	nucleus	22.34	19.53
TraesCS7A01G135100.1	Wheat	nucleus	21.81	19.11
TraesCS7D01G135200.1	Wheat	nucleus	21.81	19.11
TraesCS7D01G135700.1	Wheat	nucleus	22.07	19.08
TraesCS7A01G135400.1	Wheat	nucleus	21.54	18.84
TraesCS7D01G135600.1	Wheat	nucleus	17.55	18.54
TraesCS7D01G135500.1	Wheat	nucleus	19.41	18.2
Solyc02g082380.1.1	Tomato	nucleus	9.84	16.67
PGSC0003DMT400086891	Potato	nucleus	9.04	15.74
TraesCS2B01G617700.1	Wheat	nucleus	14.89	14.04
TraesCS2D01G567700.1	Wheat	nucleus	13.83	13.76
Solyc02g082390.1.1	Tomato	nucleus	10.11	13.52
KXG36349	Sorghum	nucleus	10.11	10.35
PGSC0003DMT400091980	Potato	nucleus	9.57	8.93
OQU89906	Sorghum	nucleus	6.12	6.82

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.2	EntrezGene:8068215	UniProt:C5YZP1	EnsemblPlants:EES18997	ProteinID:EES18997
ProteinID:EES18997.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:Homeobox-like_sf	InterPro:IPR017930
InterPro:Myb_dom	InterPro:Myb_dom_plants	PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR12374	PANTHER:PTHR12374:SF28
InterPro:SANT/Myb	SMART:SM00717	EnsemblPlantsGene:SORBI_3009G039200	SUPFAM:SSF46689	TIGRFAMs:TIGR01557	UniParc:UPI0001A88B99
RefSeq:XP_002440567.1	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr9:-:3691090..3692696

Molecular Weight (calculated)

42853.6 Da

IEP (calculated)

7.196

GRAVY (calculated)

-0.751

Length

376 amino acids

Sequence
(BLAST)

001: MDPNFSGVWS AFKIDMVRSF IASHNTNNTY TNDPNKKHND IVDELQARFP GKERYQVIQL YVDLVVEMNT TQSNQQVVAS KAPVNDNFGM STEDTNMNNM
101: EMIHGYILDD VQTMKMVEEL PHRLNIVHKK KRQHPPIAWS HDEHKNFLRG LEAYGRGNWK NISRYFVPTR TPNQICSHAQ KYFHRNECTT RKQRFSINDV
201: SLYDTEPWVQ KNSSSLKCLT FGHSAYNTHY YDIEGQHAVL NKLAHPSQAS STHAATWTRG QHVLAGSSID PTMVQSNALG WEALAFTRGA NNTNYYDFDG
301: QHNAMNNLAY VDPTSNNHVA TWTRGQHTTT NSSIVPAMVQ NTSPSEEVLS FTGNSYNTNY YDYSGQNVAL NSGQPW

Best Arabidopsis Sequence Match ( AT5G08520.1 )
(BLAST)

001: MTVEEVSDGS VWSREDDIAF ERALANNTDE SEERWEKIAA DVPGKSVEQI KEHYELLVED VTRIESGCVP LPAYGSPEGS NGHAGDEGAS SKKGGNSHAG
101: ESNQAGKSKS DQERRKGIAW TEDEHRLFLL GLDKYGKGDW RSISRNFVVT RTPTQVASHA QKYFIRLNSM NKDRRRSSIH DITSVGNADV STPQGPITGQ
201: NNSNNNNNNN NNNSSPAVAG GGNKSAKQAV SQAPPGPPMY GTPAIGQPAV GTPVNLPAPP HMAYGVHAAP VPGSVVPGAA MNIGQMPYTM PRTPTAHR

Arabidopsis Description

SRM1Transcription factor SRM1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FNN6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.