CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plasma membrane 1
extracellular 1
endoplasmic reticulum 1
golgi 1
vacuole 1
plastid 2
nucleus 5
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	secretory
ChloroP:	plastid
EpiLoc:	nucleus
iPSORT:	mitochondrion
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
EER92178
EES14021
KXG35797
KXG36712

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G73100.1	EER92178	AT5G09540.1	21798944
AT1G73100.1	EES14021	AT5G09540.1	21798944
AT1G73100.1	KXG35797	AT5G09540.1	21798944
AT1G73100.1	KXG36712	AT5G09540.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d038541_P002	Maize	nucleus	92.58	90.17
Os05t0490700-01	Rice	extracellular	82.2	82.44
TraesCS1D01G366800.1	Wheat	nucleus	80.71	80.47
TraesCS1A01G362000.1	Wheat	nucleus	80.71	80.47
TraesCS1B01G378900.1	Wheat	nucleus	80.42	80.42
TraesCS1B01G319000.1	Wheat	nucleus	79.53	79.53
HORVU1Hr1G068460.1	Barley	nucleus	79.53	79.53
TraesCS1D01G307700.1	Wheat	nucleus	78.93	78.93
TraesCS1A01G308300.1	Wheat	nucleus	78.64	78.64
HORVU0Hr1G001190.1	Barley	nucleus	79.67	75.21
EES01635	Sorghum	nucleus	68.84	62.53
CDY04931	Canola	cytosol, extracellular, nucleus	6.53	57.89
Bra009408.1-P	Field mustard	nucleus	37.54	49.41
OQU78645	Sorghum	nucleus	51.34	46.38
KRH56252	Soybean	nucleus	14.54	46.01
Bra028776.1-P	Field mustard	nucleus	42.28	44.88
Bra005829.1-P	Field mustard	nucleus	41.99	43.88
CDY11319	Canola	nucleus	41.99	43.88
CDX80930	Canola	nucleus	41.69	43.63
Solyc09g082050.2.1	Tomato	nucleus	41.69	43.43
CDX98805	Canola	nucleus	41.99	43.21
AT1G73100.1	Thale cress	nucleus	42.73	43.05
CDX68245	Canola	nucleus	42.43	42.94
EES10399	Sorghum	nucleus	52.08	42.86
AT5G04940.2	Thale cress	nucleus	42.58	42.84
CDY11129	Canola	nucleus	42.43	42.75
CDY61331	Canola	nucleus	42.28	42.6
KRH66648	Soybean	nucleus	44.66	42.51
PGSC0003DMT400077329	Potato	nucleus	42.28	42.47
EER96081	Sorghum	nucleus	52.23	42.41
Bra009409.1-P	Field mustard	nucleus	41.69	42.26
VIT_13s0047g00120.t01	Wine grape	nucleus	44.81	42.18
CDY59935	Canola	nucleus	40.95	41.88
CDX96449	Canola	nucleus	40.8	41.86
KRH62706	Soybean	nucleus	41.25	41.68
KRH20576	Soybean	nucleus	41.39	41.46
KRH13229	Soybean	nucleus	41.39	41.46
Bra016018.1-P	Field mustard	nucleus	41.25	41.06
AT2G05900.1	Thale cress	cytoskeleton, cytosol, nucleus	18.69	40.38
CDX98804	Canola	nucleus	36.5	40.13
Solyc10g077070.1.1	Tomato	nucleus	42.43	40.06
PGSC0003DMT400018512	Potato	nucleus	42.28	39.69
VIT_08s0040g00360.t01	Wine grape	nucleus	43.03	39.35
CDY14135	Canola	nucleus	41.69	38.92
KRG95012	Soybean	plastid	27.45	37.91
AT1G17770.1	Thale cress	nucleus	36.2	35.21
CDY26218	Canola	nucleus	34.12	32.95
CDY66122	Canola	nucleus	34.12	32.21
AT2G24740.1	Thale cress	nucleus	34.42	30.73
OQU80399	Sorghum	nucleus	25.96	30.7
CDY56214	Canola	nucleus	33.68	28.63
EES14036	Sorghum	nucleus	27.74	28.08
CDX70182	Canola	nucleus	41.69	27.77
EER96294	Sorghum	nucleus	28.78	27.32
EES01534	Sorghum	nucleus	13.65	27.14
OQU88147	Sorghum	nucleus	26.56	25.79
Bra025949.1-P	Field mustard	nucleus	33.98	25.64
CDY26221	Canola	nucleus	33.98	25.59
Bra004258.1-P	Field mustard	nucleus	33.83	24.81
OQU77925	Sorghum	nucleus	26.56	23.74
EES05802	Sorghum	nucleus	24.18	20.71
EES12588	Sorghum	nucleus	26.71	20.2
EES13797	Sorghum	nucleus	28.49	16.98
EER96634	Sorghum	nucleus	30.42	16.45
EES13798	Sorghum	nucleus	30.71	16.43
OQU85329	Sorghum	nucleus	15.43	15.34
EES15150	Sorghum	nucleus	16.77	15.29
OQU80395	Sorghum	nucleus	13.35	15.18
CDY01852	Canola	plasma membrane	35.01	12.72
EES13161	Sorghum	nucleus	14.84	12.69
KXG30908	Sorghum	nucleus	18.55	7.85
CDX89821	Canola	cytosol	0.0	0.0
CDX86631	Canola	cytosol	0.0	0.0
CDY53193	Canola	mitochondrion	0.0	0.0
CDY21127	Canola	cytosol	0.0	0.0

Protein Annotations

KEGG:00310+2.1.1.43	MapMan:12.3.3.7	MapMan:12.5.1.16.1	Gene3D:2.170.270.10	Gene3D:2.30.280.10	EntrezGene:8064166
UniProt:C5Z079	EnsemblPlants:EES19725	ProteinID:EES19725	ProteinID:EES19725.1	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005694	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0008168	GO:GO:0008270
GO:GO:0009987	GO:GO:0016043	GO:GO:0016571	GO:GO:0016740	GO:GO:0018024	GO:GO:0019538
GO:GO:0032259	GO:GO:0034968	GO:GO:0042393	InterPro:Hist-Lys_N-MeTrfase_plant	InterPro:IPR001214	InterPro:IPR003105
InterPro:IPR003616	InterPro:IPR007728	InterPro:IPR025794	InterPro:IPR036987	PFAM:PF00856	PFAM:PF02182
PFAM:PF05033	PFscan:PS50280	PFscan:PS50867	PFscan:PS50868	PFscan:PS51015	PFscan:PS51575
PANTHER:PTHR22884	PANTHER:PTHR22884:SF372	InterPro:PUA-like_sf	InterPro:Post-SET_dom	InterPro:Pre-SET_dom	InterPro:SET_dom
SMART:SM00317	SMART:SM00466	SMART:SM00468	EnsemblPlantsGene:SORBI_3009G179700	InterPro:SRA-YDG_sf	InterPro:SRA_YDG
SUPFAM:SSF82199	SUPFAM:SSF88697	unigene:Sbi.8347	UniParc:UPI0001A88F60	RefSeq:XP_002441295.1	:

Description

hypothetical protein

Coordinates

chr9:-:53411993..53417058

Molecular Weight (calculated)

74188.2 Da

IEP (calculated)

7.999

GRAVY (calculated)

-0.431

Length

674 amino acids

Sequence
(BLAST)

001: MYRASNFVPD PNQVLLDAKP LRSLAPMFPA PMGVNVNQSS TPPLVCVTPV GQFPAGFGAG NLPAFGSFTT FSATANGVSY TGTSANGAID ATPISAYKTR
101: TGISLGDDEL YSGNQTLVTK RKRGRPLGSG RNGPNGKVKR PKPTYKNFVA GKELAFLSSS SDPREIVESV HMAFEALRRR HLQMDETQDA SRRADLKAGA
201: IMMASNIRAN TGKRVGTVPG VEIGDIFYFR MELCVLGLHA PSMGGIDYMT TKFGNDEESV AICIVSAGGY ENEDDDTDVL VYSGQGGNSR NTEERHDQKL
301: ERGNLALERS LHRKNVIRVV RGFKDPFCLT GKIYIYDGLY KIHESWKEKT RSGINCFKYK LLREPGQRDG AALWKMTQRW IDNPATRGRV LLADLSSKAE
401: ALPVCVVNDV DHEKGPGEFT YTNQVKYSRP LSSMKKLQGC GCQSVCLPGD ASCACGQHNG GDLPYSSLGL LSCRKPIIYE CGESCNCSIN CRNKVTQKGS
501: RLHFEVFRTT NRGWGLRCWE PVRAGSFICE YAGEVIDELR VNLNDCEDDY IFQTVCPGEK TLKWNCGPEM IGEESTYVSS DEFEPLPIKI SAKNMGNVSR
601: FMNHSCSPNV FWQPVQYDHG DDGHPHIMFF ALKHIPPMTE LTYDYGVAGA ESSGPGSRRT KNCMCGSQNC RGLF

Best Arabidopsis Sequence Match ( AT1G73100.1 )
(BLAST)

001: MQGVPGFNTV PNPNHYDKSI VLDIKPLRSL KPVFPNGNQG PPFVGCPPFG PSSSEYSSFF PFGAQQPTHD TPDLNQTQNT PIPSFVPPLR SYRTPTKTNG
101: PSSSSGTKRG VGRPKGTTSV KKKEKKTVAN EPNLDVQVVK KFSSDFDSGI SAAEREDGNA YLVSSVLMRF DAVRRRLSQV EFTKSATSKA AGTLMSNGVR
201: TNMKKRVGTV PGIEVGDIFF SRIEMCLVGL HMQTMAGIDY IISKAGSDEE SLATSIVSSG RYEGEAQDPE SLIYSGQGGN ADKNRQASDQ KLERGNLALE
301: NSLRKGNGVR VVRGEEDAAS KTGKIYIYDG LYSISESWVE KGKSGCNTFK YKLVRQPGQP PAFGFWKSVQ KWKEGLTTRP GLILPDLTSG AESKPVSLVN
401: DVDEDKGPAY FTYTSSLKYS ETFKLTQPVI GCSCSGSCSP GNHNCSCIRK NDGDLPYLNG VILVSRRPVI YECGPTCPCH ASCKNRVIQT GLKSRLEVFK
501: TRNRGWGLRS WDSLRAGSFI CEYAGEVKDN GNLRGNQEED AYVFDTSRVF NSFKWNYEPE LVDEDPSTEV PEEFNLPSPL LISAKKFGNV ARFMNHSCSP
601: NVFWQPVIRE GNGESVIHIA FFAMRHIPPM AELTYDYGIS PTSEARDESL LHGQRTCLCG SEQCRGSFG

Arabidopsis Description

SUVH3Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH3 [Source:UniProtKB/Swiss-Prot;Acc:Q9C5P4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.