Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr6P10170_001 | Banana | nucleus | 83.77 | 77.7 |
| Os03t0395900-02 | Rice | nucleus | 67.54 | 63.47 |
| TraesCS4D01G149700.1 | Wheat | nucleus | 66.73 | 62.83 |
| HORVU4Hr1G039020.13 | Barley | nucleus | 66.33 | 62.69 |
| VIT_07s0031g00640.t01 | Wine grape | nucleus | 68.94 | 62.32 |
| TraesCS4A01G149000.1 | Wheat | nucleus | 65.93 | 61.96 |
| TraesCS4B01G164500.1 | Wheat | nucleus | 66.93 | 60.62 |
| Solyc02g090850.2.1 | Tomato | nucleus | 66.53 | 59.18 |
| PGSC0003DMT400010353 | Potato | nucleus | 66.33 | 59.0 |
| KRH28473 | Soybean | nucleus | 63.33 | 57.66 |
| KRH77000 | Soybean | nucleus | 62.73 | 57.54 |
| AT4G36980.4 | Thale cress | nucleus | 63.33 | 56.83 |
| CDX75625 | Canola | nucleus | 61.92 | 56.49 |
| Bra011736.1-P | Field mustard | nucleus | 61.72 | 56.41 |
| Zm00001d029426_P024 | Maize | nucleus | 66.53 | 56.37 |
| OQU92461 | Sorghum | nucleus | 68.74 | 53.26 |
| CDX69275 | Canola | nucleus | 57.52 | 49.06 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr10P19390_001 | EnsemblPlants:GSMUA_Achr10T19390_001 | EnsemblPlantsGene:GSMUA_Achr10G19390_001 | InterPro:SWAP_N_domain | ncoils:Coil | PANTHER:PTHR13161 |
| PANTHER:PTHR13161:SF4 | PFAM:PF09750 | SEG:seg | SMART:SM01141 | UniParc:UPI000294805D | UniProt:M0RJL4 |
| MapMan:35.2 | : | : | : | : | : |
Description
splicing factor, arginine/serine-rich 16, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr10G19390_001]
Coordinates
chr10:+:25800172..25806758
Molecular Weight (calculated)
58086.7 Da
IEP (calculated)
10.625
GRAVY (calculated)
-1.382
Length
499 amino acids
Sequence
(BLAST)
(BLAST)
001: MWHEARRSER KVHDMMDAAR KRAQRRAVYL AKRRGVPQQS LQVTGARCRV YRDDGLYQAA QDQQGLIPWN GKQDILIARF DGRALLDFIR DSSCLSITDD
101: EGLQHVHQQL EAKNSLPFAF ERPRSTQLPV SEGSYSQVGF SYKGEGHEES HNLDSESEDE DDDEDDDEKD FSSDDSNDER METIAKEFGI KRYNWLVYMD
201: KKAKKEEKRQ KEIIRGDPAI RKLSRKERRK ASQMEREKER EAAHLTGRAP HHDPYRESRR SPTYEAYPRS RISRSRSRSF SPSHSRWHEH SSHADNGRRS
301: KSKPPKIEYI TEFGGTNDLD QKFGGVSPPS SPLQADLSNR ASGGRVLEAL HVDPASAMSL EQEKNAKMLR PPIRQFAQDI PKLSKTPLGA ASKTQQDKRK
401: ETPQERLKRI MSKQLNKQIR KDTAAEMAKK REQERQRQEK VAEATRINHY SHRSRRRSYS PSPPRRRRHS RSHSRSRSPR GYYSRSRSHS PQSRSRTRY
101: EGLQHVHQQL EAKNSLPFAF ERPRSTQLPV SEGSYSQVGF SYKGEGHEES HNLDSESEDE DDDEDDDEKD FSSDDSNDER METIAKEFGI KRYNWLVYMD
201: KKAKKEEKRQ KEIIRGDPAI RKLSRKERRK ASQMEREKER EAAHLTGRAP HHDPYRESRR SPTYEAYPRS RISRSRSRSF SPSHSRWHEH SSHADNGRRS
301: KSKPPKIEYI TEFGGTNDLD QKFGGVSPPS SPLQADLSNR ASGGRVLEAL HVDPASAMSL EQEKNAKMLR PPIRQFAQDI PKLSKTPLGA ASKTQQDKRK
401: ETPQERLKRI MSKQLNKQIR KDTAAEMAKK REQERQRQEK VAEATRINHY SHRSRRRSYS PSPPRRRRHS RSHSRSRSPR GYYSRSRSHS PQSRSRTRY
001: MWHEARRSEK KVHDMMDAAR KRAQRRAIYL AKRRGDPIQS IQAVGSRYRV FRDDGLYQAT EDQQGLIPWN GKQDVMIDRF DGRALLDFVR EAGSRSVRPH
101: KKTEEEEELE EFVNFERYRD LIKHRRRGFS DEEGLQHVHQ ELEAKLAAPF LGTRTQPAQP PANKGTYSQV GFSYAGNGKD NSLDADEDDV DDDEDDEDEE
201: EEFDSNDSDD EGMETIAKQF GIKRYGWLVY MDKKAKEEEK RQKELIKGDP SIKKLSRKER RKVSRIERDR ERETSRSVGR QIIHHDPYRE SRRSPTYEAY
301: PRSRRSRSRS RSYSPSYSRR NGRGDHSDEI SKPKIEYITE FGGGSGDMRS PKFEGYSPPR SPPSQSDLLS RPSPGRILEA LHVDPASDIS LEKDKVAKPA
401: KSTVSTSTAL AKLSKVAGTS SSKQSQAEKK ETPQERLKRI MNKQLTKQIK KDSATETAKK REQERQRLEK LAETSRLSRN RQRSRSRSIS RSPPPRRHRR
501: SRSRSGSRSR RSRRHSSRSR SRSPSRSLSR SPKRSRRRSP SYSRSPRRRS SRSRH
101: KKTEEEEELE EFVNFERYRD LIKHRRRGFS DEEGLQHVHQ ELEAKLAAPF LGTRTQPAQP PANKGTYSQV GFSYAGNGKD NSLDADEDDV DDDEDDEDEE
201: EEFDSNDSDD EGMETIAKQF GIKRYGWLVY MDKKAKEEEK RQKELIKGDP SIKKLSRKER RKVSRIERDR ERETSRSVGR QIIHHDPYRE SRRSPTYEAY
301: PRSRRSRSRS RSYSPSYSRR NGRGDHSDEI SKPKIEYITE FGGGSGDMRS PKFEGYSPPR SPPSQSDLLS RPSPGRILEA LHVDPASDIS LEKDKVAKPA
401: KSTVSTSTAL AKLSKVAGTS SSKQSQAEKK ETPQERLKRI MNKQLTKQIK KDSATETAKK REQERQRLEK LAETSRLSRN RQRSRSRSIS RSPPPRRHRR
501: SRSRSGSRSR RSRRHSSRSR SRSPSRSLSR SPKRSRRRSP SYSRSPRRRS SRSRH
Arabidopsis Description
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Splicing factor, suppressor of white apricot (InterPro:IPR019147); /.../72 Blast hits to 5479 proteins in 321 species: Archae - 0; Bacteria - 89; Metazoa - 5155; Fungi - 712; Plants - 341; Viruses - 39; Other Eukaryotes - 1336 (source: NCBI BLink). [Source:TAIR;Acc:AT4G36980]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.