Factsheet for GSMUA_Achr10P25360_001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
plasma membrane 5
extracellular 1
endoplasmic reticulum 1
vacuole 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	plasma membrane
Plant-mPloc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER90350	Sorghum	plasma membrane	62.06	65.01
Os06t0707100-01	Rice	plasma membrane	61.66	64.6
TraesCS7A01G411800.1	Wheat	plasma membrane	61.66	64.33
TraesCS7B01G311000.1	Wheat	plasma membrane	62.06	64.08
Solyc04g007540.1.1	Tomato	plasma membrane	59.29	62.5
TraesCS7D01G405000.1	Wheat	plasma membrane	60.47	62.07
VIT_01s0011g04460.t01	Wine grape	plasma membrane	55.34	61.67
GSMUA_Achr11P...	Banana	plasma membrane	58.89	61.07
OQU77045	Sorghum	plastid	46.64	57.42
HORVU7Hr1G095900.1	Barley	plastid	57.31	54.21
GSMUA_Achr3P29080_001	Banana	plasma membrane	43.68	49.89
Zm00001d036449_P002	Maize	plasma membrane	52.96	49.81
GSMUA_Achr4P03730_001	Banana	endoplasmic reticulum, plasma membrane, vacuole	43.48	49.66
GSMUA_Achr2P13840_001	Banana	plasma membrane	33.4	38.5
GSMUA_Achr4P27830_001	Banana	plasma membrane	37.15	33.69

Protein Annotations

MapMan:24.2.4.1.1	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0006810	GO:GO:0006855
GO:GO:0008150	GO:GO:0015238	GO:GO:0015297	GO:GO:0016020	GO:GO:0016021	GO:GO:0055085
EnsemblPlantsGene:GSMUA_Achr10G25360_001	EnsemblPlants:GSMUA_Achr10P25360_001	EnsemblPlants:GSMUA_Achr10T25360_001	UniProt:M0RLB0	InterPro:MATE_fam	PFAM:PF01554
PANTHER:PTHR11206	PANTHER:PTHR11206:SF173	TIGRFAMs:TIGR00797	TMHMM:TMhelix	UniParc:UPI0002958BF5	SEG:seg

Description

Putative Protein TRANSPARENT TESTA 12 [Source:GMGC_GENE;Acc:GSMUA_Achr10G25360_001]

Coordinates

chr10:+:29420359..29425752

Molecular Weight (calculated)

55184.1 Da

IEP (calculated)

5.609

GRAVY (calculated)

0.694

Length

506 amino acids

Sequence
(BLAST)

001: MRGEDASPLL VPAAIPERGF EEEDRLCCSL RLRNDVDVVA EARRLLSLAG PLIAASLLQY SLQLISIMFV GHLGELNLSG ASMATSFANV SGFSVLLGMA
101: SALDTSCGQA YGAKEYHMLG IHMQRAMFIL LLVSVPLALV WTYTSQILIA AGQNPEISAE AGKYACWLIP SLFAYGLLQC LIKFLQTQNT VFPMLISSGI
201: TAFFHIFICW VLVYISGFGS KGAALATSIS YWINVFLLVI YVKFSQACKE TWTGLSWESL KDVFDFLTLA VPSAFMICVE FWSFEMVVLL SGLLPDPKLE
301: TSVLSISLNT MWMVYMIPTG LSSAVSIRVS NELGAGQPQA ASLSVHVVLI IAIMEGLVVA LITILVRNVW GYLYSYEEDV IKYVSIMMPV LAISDFMDGI
401: QCTLSGAARG CGWQKFCSFV NLGAYYVVGI PSAIMFAFFL HIGGKGLWMG IICALVVQVL VLTAAILRTD WGQEAKKARD RVTSAAIHTG HSDRFPDSLP
501: SSIEAY

Best Arabidopsis Sequence Match ( AT5G52450.1 )
(BLAST)

001: MRDDRERGEG DLSWPLIGEK SSVKEEVKKQ LWLSGPLIAV SLLQFCLQVI SVMFVGHLGS LPLSAASIAT SFASVTGFSF LMGTASALDT LCGQAYGAKK
101: YGMLGIQMQR AMFVLTLASI PLSIIWANTE HLLVFFGQNK SIATLAGSYA KFMIPSIFAY GLLQCFNRFL QAQNNVFPVV FCSGVTTSLH VLLCWVLVFK
201: SGLGFQGAAL ANSISYWLNV VLLFCYVKFS PSCSLTWTGF SKEALRDILP FLRLAVPSAL MVCLEMWSFE LLVLLSGLLP NPVLETSVLS ICLNTSGTMW
301: MIPFGLSGAA STRISNELGA GNPKVAKLAV RVVICIAVAE SIVIGSVLIL IRNIWGLAYS SELEVVSYVA SMMPILALGN FLDSLQCVLS GVARGCGWQK
401: IGAIINLGSY YLVGVPSGLL LAFHFHVGGR GLWLGIICAL VVQVFGLGLV TIFTNWDEEA KKATNRIESS SSVKDFAVDD RSVVVF

Arabidopsis Description

DTX16Protein DETOXIFICATION [Source:UniProtKB/TrEMBL;Acc:A0A178UMN3]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.