Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_03s0038g01880.t01 | Wine grape | cytosol | 37.37 | 45.81 |
| Zm00001d030342_P001 | Maize | plastid | 10.88 | 43.36 |
| Solyc11g039890.1.1 | Tomato | cytosol | 12.46 | 42.52 |
| VIT_03s0038g01870.t01 | Wine grape | cytosol | 7.89 | 41.28 |
| Os10t0154566-00 | Rice | plastid | 9.65 | 34.59 |
| Solyc11g039880.1.1 | Tomato | nucleus | 35.09 | 26.95 |
| TraesCS7B01G055100.1 | Wheat | cytosol, plasma membrane, plastid | 50.7 | 14.71 |
| TraesCS7A01G151100.1 | Wheat | plastid | 50.53 | 14.66 |
| HORVU7Hr1G031100.1 | Barley | cytosol | 50.35 | 14.62 |
| OQU82713 | Sorghum | plastid | 50.18 | 14.58 |
| TraesCS7D01G153000.1 | Wheat | cytosol, plasma membrane, plastid | 50.18 | 14.58 |
| CDY22413 | Canola | cytosol | 44.74 | 14.51 |
| KRH24149 | Soybean | nucleus | 48.95 | 14.19 |
| AT4G38760.1 | Thale cress | cytosol | 45.79 | 13.28 |
| CDX72740 | Canola | cytosol | 44.56 | 12.9 |
| Bra033575.1-P | Field mustard | cytosol | 44.56 | 12.76 |
| Zm00001d030340_P037 | Maize | plasma membrane | 35.79 | 11.35 |
| GSMUA_Achr11P... | Banana | plasma membrane | 0.18 | 0.08 |
| Solyc11g039870.1.1 | Tomato | nucleus | 0.0 | 0.0 |
| PGSC0003DMT400056702 | Potato | endoplasmic reticulum, extracellular, plastid | 0.0 | 0.0 |
| Os10t0154600-01 | Rice | peroxisome, plasma membrane, plastid | 0.0 | 0.0 |
| KRH29119 | Soybean | mitochondrion | 0.0 | 0.0 |
| VIT_03s0038g01920.t01 | Wine grape | plasma membrane | 0.0 | 0.0 |
Protein Annotations
| MapMan:23.5.1.1.2.2 | ncoils:Coil | GO:GO:0003674 | GO:GO:0005198 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0006810 | GO:GO:0006913 | GO:GO:0008150 | GO:GO:0017056 | EnsemblPlantsGene:GSMUA_Achr11G01030_001 |
| EnsemblPlants:GSMUA_Achr11P01030_001 | EnsemblPlants:GSMUA_Achr11T01030_001 | UniProt:M0RND4 | InterPro:Nucleoporin_Nup188 | PFAM:PF10487 | PANTHER:PTHR31431 |
| UniParc:UPI000296C464 | SEG:seg | : | : | : | : |
Description
Whole genome shotgun sequence of line PN40024, scaffold_38.assembly12x (Fragment) [Source:GMGC_GENE;Acc:GSMUA_Achr11G01030_001]
Coordinates
chr11:+:683973..697150
Molecular Weight (calculated)
64665.3 Da
IEP (calculated)
4.825
GRAVY (calculated)
0.208
Length
570 amino acids
Sequence
(BLAST)
(BLAST)
001: MANAAPAATP VDESLWWDSF VALFDELDKV PHSEKLPDHL AEKLRRNHAW FLNSVTLFKP PDQTSRLALD SREIAVGSHR ILVKPELKNA ALRFSELMCL
101: NEVQSYILVH RAYRISKLVA DVEDKEFLHS VLLNYFLERQ CLLQCLRRIF ANALHTSNGL LSTEAFKGIA LQLINDGFER KLLTIFQDLL LSVFSDQTEV
201: DLKILWVDEI LIEENLLMDI LFLAYYDNFC SCKIEQWKTM CSLFKDVLCG SLNIGKVAVS TEARNSFAHV RAKMVLILIE TLDLENLLHM VHDQIPFREG
301: GSVFSVIDIK EMDAQVSSFY DLGAVEAGPL LLAWAVFLSL LLSLHETHNS STLMEIDHVS YVRQAFEVAA FDYILEILGN DTFRDSDGPV SGFLSVMRTF
401: LSAFIASYEL SHQKEDNTLI KILDILYHIY HGEESLALQF WDKECFVDGP IRSILFMLEK EYNYLDKMSG ITTLFEISGG YGDKTVSDII ETHHPIEVPG
501: VEGLLIPSGT LGRILKFLAP NIAIVCWECA HSGILLLVLR LTQDFHSDNV DDVSLTLNLL HRIISFNKVL
101: NEVQSYILVH RAYRISKLVA DVEDKEFLHS VLLNYFLERQ CLLQCLRRIF ANALHTSNGL LSTEAFKGIA LQLINDGFER KLLTIFQDLL LSVFSDQTEV
201: DLKILWVDEI LIEENLLMDI LFLAYYDNFC SCKIEQWKTM CSLFKDVLCG SLNIGKVAVS TEARNSFAHV RAKMVLILIE TLDLENLLHM VHDQIPFREG
301: GSVFSVIDIK EMDAQVSSFY DLGAVEAGPL LLAWAVFLSL LLSLHETHNS STLMEIDHVS YVRQAFEVAA FDYILEILGN DTFRDSDGPV SGFLSVMRTF
401: LSAFIASYEL SHQKEDNTLI KILDILYHIY HGEESLALQF WDKECFVDGP IRSILFMLEK EYNYLDKMSG ITTLFEISGG YGDKTVSDII ETHHPIEVPG
501: VEGLLIPSGT LGRILKFLAP NIAIVCWECA HSGILLLVLR LTQDFHSDNV DDVSLTLNLL HRIISFNKVL
0001: MANPNSVDSS LWWDPFDSLL TDLENASLSD DLPQPIAKKL EENHAWFVGT LSMFKPPSEK SKEALNSDLV KIKEHQLVIK PQLKDKALRI SSHLNLDEIQ
0101: SYILVERSME QEYGTTDSVA QELTQEFIDM ILLQYYIQRQ CLLKCTKRIL IHALYAPREE SSIKEEAVKL ISDGLERRQS SVLEDLLSSC FPKNMDVNLF
0201: TLWAEETLIE DNLILDILFL IYNESYCSCN GERWRKLCSF YKGILSGSYN FSKLAVSVEA QHSACRVQIQ LLMILIETLD MENLLQMVHD GVPFRSGTCV
0301: FSIVDVQEMD ATISSLNTSE VNEAGPLVLA WAVFLCLISS LPGKEESPFL MDIDHVSYVH QAFEAASLSY FLEILQSNLL NDFDGPISGH RSVVRTFISA
0401: FIASYEINLQ LEDGTLELIL DILSKVYQGE ESLCCQFWDR KSFVDGPIRC LLFDLESEFP FRSAEFIRLL SSLSEGSWPA ECVYNFLDKS VGVSTLFDIT
0501: SDSPADDASQ LVETSRPLHI PGLEGLVIPS NTRGRILRVI SENTVLVRWE YSLSGIIVLI IRLANKLYIG NNREAFVTLE LLRRMVTFNK AVCFSLLNIS
0601: HFFYVQESYV NGKMESDVRV VDIICNSVRS LTFDSGGAAV MAMAIDILAK LLRCSPSSVA PMVLKSNIFD MTSCSDVPDS GYNISLSGSW SLSGKLAKMI
0701: LIDCEKNDTS CPLVISVLEF TMQLVEGGLE NDVVFALVVF SLQYILASHE YWKYNHGNMR WKVTLKVIEL MKTCLRFSKF STKLRDVLLD ILLNDASVHS
0801: ALFRIICTTT QNLENLCSSR FIEPAEIEGW QLAIVSVLDV LNVILSQFSE STHSGLPVFH QAMLSSTTKP ISVVAAITSL ISYFRNPTIQ VCAAQVLSKL
0901: FALAESSQLY IISNAGFGLD NKQITDLRNS VTQIVLDLSG QNEHLVVATL KLLTVAARFQ PALLVAIFDS DEDSDSSNVK QSRKDASSIP DWACKSRLLH
1001: TILQYVERAT DFVDRHTDIL LGLLDFLKTL WQEAGQYANM LEPFKASKKL WQEFSDIISQ ASKIKDSTVG SLGKEEISKL LVKYQCQASV LEIMACNMFL
1101: YKKLLFAESL KKPCVETKKT ASNGVSPPKL TWTADSDPKD IFSKWCDISV LDGIIQSVSS LDGESEINFQ AKVAAVLLIV HLIVKLETSG AGALSMVLVE
1201: KIKLISETLC AQPAFSELLA QYSKLGYSGG KELMPMIFSD LYCHLQGKLE GRDIPTGPFK ELFQFLVETS FWEKYKQKTN KDVNMALGDC LFDTQQIQTE
1301: LGIDIWDFSE WKTSKTTAEE MLNYMQRANS MVLLSTSQLS VLHALISVLI LYEDNSLEES AAAERKIPSR VTLLSIDKVC RKFCTTVDSL ASLWDAPKIV
1401: FDILTAQADL LSRLLKSAKK NLSLSVCALV LRNVGPGLKI LGSLRHSNAI LKKTINLLLE VLLLVVGFGS DNSNSSGMGH MVLAKDFAEI SDATIGLLPL
1501: LCNFMGNPEY LTLCLTTVDL ILRNFLTPET WFPIIQSQLR LQHVILQLQD KKSTTSVSAI LKFFLTIAQV HGGAQMLLNS GFFSTLRALL MEFPDGMSTL
1601: VSDNEKGSLL EKTEKTQHIW GIGLAVVTAM VHSLGSVSAG ADIVESVISY FFLEKGYMIS YYLAAPDFPS DDRDKVRLRS QRTWTSLAYL RVTEHTLLLL
1701: CALASHWRSW VKIMKDMDSP LREMTIHLLA FISKGAQRLR ESQSHISHLL CPPVAKEEFD SCKRPSFINT KHGWFSLAPL VCVGKPKITA VSISTALVVR
1801: GDTTEHPGSV PQSQFSDSVA IQIYRVASLL LKFLCLQAEG VVTRAEEVGY VDIAHFPELP EPEILHGLQD QATAIVAELC DNYKSKEIPD EVKKLCLMLI
1901: QTTEMSLYLE LCVVQVCRIH PVFGRVDNFS KDLKKLVKAA EVHTYLEPSI DSLKKIAAFL YPGSL
0101: SYILVERSME QEYGTTDSVA QELTQEFIDM ILLQYYIQRQ CLLKCTKRIL IHALYAPREE SSIKEEAVKL ISDGLERRQS SVLEDLLSSC FPKNMDVNLF
0201: TLWAEETLIE DNLILDILFL IYNESYCSCN GERWRKLCSF YKGILSGSYN FSKLAVSVEA QHSACRVQIQ LLMILIETLD MENLLQMVHD GVPFRSGTCV
0301: FSIVDVQEMD ATISSLNTSE VNEAGPLVLA WAVFLCLISS LPGKEESPFL MDIDHVSYVH QAFEAASLSY FLEILQSNLL NDFDGPISGH RSVVRTFISA
0401: FIASYEINLQ LEDGTLELIL DILSKVYQGE ESLCCQFWDR KSFVDGPIRC LLFDLESEFP FRSAEFIRLL SSLSEGSWPA ECVYNFLDKS VGVSTLFDIT
0501: SDSPADDASQ LVETSRPLHI PGLEGLVIPS NTRGRILRVI SENTVLVRWE YSLSGIIVLI IRLANKLYIG NNREAFVTLE LLRRMVTFNK AVCFSLLNIS
0601: HFFYVQESYV NGKMESDVRV VDIICNSVRS LTFDSGGAAV MAMAIDILAK LLRCSPSSVA PMVLKSNIFD MTSCSDVPDS GYNISLSGSW SLSGKLAKMI
0701: LIDCEKNDTS CPLVISVLEF TMQLVEGGLE NDVVFALVVF SLQYILASHE YWKYNHGNMR WKVTLKVIEL MKTCLRFSKF STKLRDVLLD ILLNDASVHS
0801: ALFRIICTTT QNLENLCSSR FIEPAEIEGW QLAIVSVLDV LNVILSQFSE STHSGLPVFH QAMLSSTTKP ISVVAAITSL ISYFRNPTIQ VCAAQVLSKL
0901: FALAESSQLY IISNAGFGLD NKQITDLRNS VTQIVLDLSG QNEHLVVATL KLLTVAARFQ PALLVAIFDS DEDSDSSNVK QSRKDASSIP DWACKSRLLH
1001: TILQYVERAT DFVDRHTDIL LGLLDFLKTL WQEAGQYANM LEPFKASKKL WQEFSDIISQ ASKIKDSTVG SLGKEEISKL LVKYQCQASV LEIMACNMFL
1101: YKKLLFAESL KKPCVETKKT ASNGVSPPKL TWTADSDPKD IFSKWCDISV LDGIIQSVSS LDGESEINFQ AKVAAVLLIV HLIVKLETSG AGALSMVLVE
1201: KIKLISETLC AQPAFSELLA QYSKLGYSGG KELMPMIFSD LYCHLQGKLE GRDIPTGPFK ELFQFLVETS FWEKYKQKTN KDVNMALGDC LFDTQQIQTE
1301: LGIDIWDFSE WKTSKTTAEE MLNYMQRANS MVLLSTSQLS VLHALISVLI LYEDNSLEES AAAERKIPSR VTLLSIDKVC RKFCTTVDSL ASLWDAPKIV
1401: FDILTAQADL LSRLLKSAKK NLSLSVCALV LRNVGPGLKI LGSLRHSNAI LKKTINLLLE VLLLVVGFGS DNSNSSGMGH MVLAKDFAEI SDATIGLLPL
1501: LCNFMGNPEY LTLCLTTVDL ILRNFLTPET WFPIIQSQLR LQHVILQLQD KKSTTSVSAI LKFFLTIAQV HGGAQMLLNS GFFSTLRALL MEFPDGMSTL
1601: VSDNEKGSLL EKTEKTQHIW GIGLAVVTAM VHSLGSVSAG ADIVESVISY FFLEKGYMIS YYLAAPDFPS DDRDKVRLRS QRTWTSLAYL RVTEHTLLLL
1701: CALASHWRSW VKIMKDMDSP LREMTIHLLA FISKGAQRLR ESQSHISHLL CPPVAKEEFD SCKRPSFINT KHGWFSLAPL VCVGKPKITA VSISTALVVR
1801: GDTTEHPGSV PQSQFSDSVA IQIYRVASLL LKFLCLQAEG VVTRAEEVGY VDIAHFPELP EPEILHGLQD QATAIVAELC DNYKSKEIPD EVKKLCLMLI
1901: QTTEMSLYLE LCVVQVCRIH PVFGRVDNFS KDLKKLVKAA EVHTYLEPSI DSLKKIAAFL YPGSL
Arabidopsis Description
Protein of unknown function (DUF3414) [Source:TAIR;Acc:AT4G38760]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.