Factsheet for GSMUA_Achr1P06560_001

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, plasma membrane

Predictor Summary:

cytosol 2
plastid 2
extracellular 2
endoplasmic reticulum 3
vacuole 2
plasma membrane 3
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, plasma membrane
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	cytosol
EpiLoc:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	endoplasmic reticulum

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_AchrUn_...	Banana	extracellular	7.4	74.16
GSMUA_Achr3P27350_001	Banana	cytosol, endoplasmic reticulum, plasma membrane	32.17	65.38
GSMUA_Achr6P30290_001	Banana	cytosol, plasma membrane, vacuole	31.61	63.09
GSMUA_Achr2P00310_001	Banana	endoplasmic reticulum, golgi	10.54	60.26
GSMUA_Achr5P15550_001	Banana	plasma membrane	28.7	59.53
GSMUA_Achr5P15540_001	Banana	plasma membrane	30.27	57.45
GSMUA_Achr2P00300_001	Banana	plastid	4.6	56.94
GSMUA_Achr3P02510_001	Banana	plasma membrane	28.7	56.89
GSMUA_AchrUn_...	Banana	extracellular	6.05	55.67
GSMUA_Achr4P26750_001	Banana	plasma membrane	29.15	53.5
GSMUA_Achr3P25060_001	Banana	plasma membrane	25.22	52.57
GSMUA_Achr4P30280_001	Banana	endoplasmic reticulum, extracellular	18.5	50.15
GSMUA_Achr3P03730_001	Banana	cytosol, golgi, plasma membrane	20.85	38.51
GSMUA_Achr2P04130_001	Banana	plasma membrane	21.75	36.74
GSMUA_Achr4P09810_001	Banana	peroxisome, plasma membrane, plastid	16.7	36.16
GSMUA_AchrUn_...	Banana	endoplasmic reticulum, extracellular	15.58	26.63
GSMUA_Achr4P26760_001	Banana	extracellular	4.04	25.17

Protein Annotations

Gene3D:1.10.560.10	Gene3D:1.20.1250.20	MapMan:24.2.2.6	MapMan:25.3.2.1	Gene3D:3.50.7.10	InterPro:Chaperone_TCP-1
ncoils:Coil	InterPro:Cpn60/TCP-1	GO:GO:0000166	GO:GO:0003674	GO:GO:0005215	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006810
GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0022857	GO:GO:0055085	InterPro:GROEL-like_equatorial_sf
EnsemblPlantsGene:GSMUA_Achr1G06560_001	EnsemblPlants:GSMUA_Achr1P06560_001	EnsemblPlants:GSMUA_Achr1T06560_001	InterPro:GroEL-like_apical_dom_sf	InterPro:IPR020846	InterPro:IPR027409
InterPro:IPR027410	InterPro:IPR027413	UniProt:M0RXL4	InterPro:MFS_dom	InterPro:MFS_sugar_transport-like	InterPro:MFS_trans_sf
PFAM:PF00083	PFAM:PF00118	PRINTS:PR00304	PANTHER:PTHR24064	PANTHER:PTHR24064:SF341	SUPFAM:SSF103473
SUPFAM:SSF48592	SUPFAM:SSF52029	SUPFAM:SSF54849	InterPro:TCP-1-like_intermed_sf	TMHMM:TMhelix	UniParc:UPI000295E3BE
SEG:seg	:	:	:	:	:

Description

Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr1G06560_001]

Coordinates

chr1:-:5234722..5240985

Molecular Weight (calculated)

97966.7 Da

IEP (calculated)

10.009

GRAVY (calculated)

0.080

Length

892 amino acids

Sequence
(BLAST)

001: MSQQLQVLNA LDVAKTQWYH FTAIVIAGMG FFTDAYDLFC ISLVTKLLGR IYYHVDGSPT PGSLPPQASA AVNGVAFVGT LSGQLFFGWL GDKMGRKRVY
101: GMTLMIMVIC SIASGLSFGH DSKGVMATLC FFRFWLGFGI GGDYPLSATI MSEYANKKTR GAFIAAVFAM QGVGILAGGM VAIADYVWRI ILMFGSLPAA
201: LTYYWRMKMP ETARYTALVA QNAKLAASDM SKEFLRRHGL HLLGTATTWF LLDIAFYSQN LFQKDIFTAI GATRSASGDL PRAAPLDLPR YLCGLREARR
301: HRRLFRVPLP GAEPEPGQGR PRVPCGHRSK ELALPPRRLQ PLGLTLHLPG SGVEGEIAGG DVRRERSRPR SHLSAGAPNP KPNSRVMVLF GLPPPGTSSI
401: SSTTSRSDRA TIRFRTLLRR SGSGKCDLDR FLPRLPSTDP FLSFASALVM FFLGGSTVAV IALFVVSCCG SCDGCFVIGI WSWEVQRSGL RRRASGGSYR
501: PMVVRDRAKE IAFGQSSWSF LQAGIEKLAD AVGVTLGPRG TLVSEVLDEV GNSKVVNGGV TIAQAIELAD PKNEQIFICS LFCMLKKLVE ELEKKARPVK
601: GRVTSIEKRN KNLSSCSNTR LPLLCYIIVQ LSLYTRYISP QLVANLEKLI LEFENAKISV TDQKISTIKE IIPFSEKMTQ LGALLLIIAE DVTARGLATL
701: VVNKLAEHSQ CCSNKITCFG DRRKAILQDI ANLTGGSLLL SHFNQLFIEN VSVGQLGTAG IFTVSQTSTT TISDAATNDE IQVRIAQLKK ELAETDSVYD
801: SEKLAERIAK GRVAVTKVGA ATETELEGPK LRMEHAKNAT FATIEVEALP MFTSQLLFLQ SRKSWKIMMS FWVLISYRRH WWRLQPGLNE MP

Best Arabidopsis Sequence Match ( AT2G38940.1 )
(BLAST)

001: MAREQLQVLN ALDVAKTQWY HFTAIIIAGM GFFTDAYDLF CISLVTKLLG RIYYHVEGAQ KPGTLPPNVA AAVNGVAFCG TLAGQLFFGW LGDKLGRKKV
101: YGMTLMVMVL CSIASGLSFG HEPKAVMATL CFFRFWLGFG IGGDYPLSAT IMSEYANKKT RGAFVSAVFA MQGFGIMAGG IFAIIISSAF EAKFPSPAYA
201: DDALGSTIPQ ADLVWRIILM AGAIPAAMTY YSRSKMPETA RYTALVAKDA KQAASDMSKV LQVEIEPEQQ KLEEISKEKS KAFGLFSKEF MSRHGLHLLG
301: TTSTWFLLDI AFYSQNLFQK DIFSAIGWIP PAQSMNAIQE VFKIARAQTL IALCSTVPGY WFTVAFIDVI GRFAIQMMGF FFMTVFMFAL AIPYNHWTHK
401: ENRIGFVIMY SLTFFFANFG PNATTFVVPA EIFPARFRST CHGISAASGK LGAMVGAFGF LYLAQNPDKD KTDAGYPPGI GVRNSLIVLG VVNFLGILFT
501: FLVPESKGKS LEEMSGENED NENSNNDSRT VPIV

Arabidopsis Description

PHT1-4PHT1 [Source:UniProtKB/TrEMBL;Acc:A0A178VRB1]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.